New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	1242091 =	41 (0.680)	5 (0.090)	3/276	7.4	11.0%	intergenic (‑20/+75)	cvrA/ldcA	putative cation/proton antiporter/murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A
	?	NC_000913_3_bme_pgi	1242139 =	43 (0.770)					intergenic (‑68/+27)	cvrA/ldcA	putative cation/proton antiporter/murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGGCGCACATGCCATTCTGAATAACACCCGGGAAGGCACTCAGTTGACGATTAGCGGTCATCCTGTTCTTAAAATGTAAAAAAATCACGCTTCAGGGCTAAGTAAAACGCTGTCTCTGCCGCTAATATGGTAGGGTTTATATAAGAGACAGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_bme_pgi/1242245‑1242091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagacagcgtTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCGTAACCGTGCGTTGTTCATGACC  >  NC_000913_3_bme_pgi/1242139‑1242276                                                                                                                                                                                                                                                                                                       TGGGCGCACATGCCATTCTGAATAACACCCGGGAAGGCACTCAGTTGACGATTAGCGGTCATCCTGTTCTTAAAATGTAAAAAAATCACGCTTCATGGCTAAGTAAAACGCTGTCTCTGCCGCTAATATGGGAGGGTTTATTTAAGAGAC                                                                                                                                                 >  1:483837/1‑150   GGCGCACATTCCATTCTGAATAACACCCGGGAAGGCACGCTGTTGACGATTAGCGGTCATCCTGTTCTTAAAATCTAAAAAAATCACTATTCAGGGCTAAGTAAAACGCTGTCTCTGCCGCTAATATGGTAGGGTTTATATAAGAGACAG                                                                                                                                               <  2:2774/150‑1   GGCGCACATGCCATTCTGAATAACACCCGGGAAGGCACTCAGTTGACGATTAGCGGTCATCCTGTTCTTAAAATGTAAAAAAATCACGCTTCAGGGCTAAGTAAAACGCTGTCTCTGCCGCTAATATGGTAGGGTTTATATTAGAGACAG                                                                                                                                               >  2:391067/1‑150   GGCGCACATGCCATTCTGAATAACACCCGGGAAGGCACTCAGTTGACGATTAGCGGTCATCCTGTTCTTAAAATGTAAAAAAATCACGCTTCAGGGCTAAGTAAAACGCTGTCTCTGCCGCTAATATGGTAGGGTTTATATAAGAGACAG                                                                                                                                               >  2:387658/1‑150    cCGCACCAGCCATTCTGAATAACTCCCGGGAAGGCACTCAGTTGACAAATAGCGGTCATCCTCTTCAAAAAATGTAAAAAAATCACGCTTCAGGGCTAATTAAACCGCTGTCTCTGCCGCTATTATGGTAGGGATTATATAAGATACAag                                                                                                                                              >  2:883053/2‑148     CGCACATGCCATTCTGAATAACACCCGGGAAGGCACTCAGTTGACGATTAGCGGTCATCCTGTTCTTAAAATGTAAAAAAATCACGCTTCAGGGCTAAGTAAAACGCTGTCTCTGCCGCTAATATGGTAGGGTTTATATAAGAGACAGCG                                                                                                                                             <  2:154095/150‑1                                                                                               AGGGCTAAGTAAAACGCTGTCTCTGCCGCTAATATGGTAGGGTTTATATAAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCA                                                   >  2:610633/1‑150                                                                                                            ACGCTGTCTCTGCCGCTAATATGGTAGGGTTTATATAAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGC                                      >  1:515845/1‑150                                                                                                            ACGCTGTCTCTGCCGCTAATATGGTAGGGTTTATATAAGAGACAGCGTTTTACATAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCACCTGAGTGCCTTCACGGGTGTTATTCAGACTGGCATGTGC                                      >  1:930126/1‑150                                                                                                                                                AAGAGACAGCGTTTTACTTATGCCTGAAGCGTGATTTTTTTACATTTTCAGAACAGGATGTCCGCTATTCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCGTAACCGTGCGTTGTTCATGACC  <  2:930126/150‑1                                                                                                                                                AAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCGTAACCGTGCGTTGTTCATGACC  <  2:515845/150‑1                                                                                                                                                                                                                                                                                                       TGGGCGCACATGCCATTCTGAATAACACCCGGGAAGGCACTCAGTTGACGATTAGCGGTCATCCTGTTCTTAAAATGTAAAAAAATCACGCTTCAGGGCTAAGTAAAACGCTGTCTCTGCCGCTAATATGGTAGGGTTTATATAAGAGACAGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_bme_pgi/1242245‑1242091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagacagcgtTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGCGCCCAACGGCAGCGTAACCGTGCGTTGTTCATGACC  >  NC_000913_3_bme_pgi/1242139‑1242276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.