| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_bme_pgi | 3,816,594 | Δ9 bp | intergenic (‑45/‑74) | rph ← / → yicC | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH/UPF0701 family protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_bme_pgi | 3816594 | 3816602 | 9 | 45 [0] | [0] 45 | rph/yicC | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH/UPF0701 family protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 3816593 | 0 (0.000) | 44 (0.990) | 40/284 | 0.2 | 100% | intergenic (‑44/‑83) | rph/yicC | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH/UPF0701 family protein |
| ? | NC_000913_3_bme_pgi | 3816603 = | 0 (0.000) | intergenic (‑54/‑73) | rph/yicC | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH/UPF0701 family protein | |||||
GTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGG > NC_000913_3_bme_pgi/3816446‑3816741 | gTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTCTAGTTACGAGTCAGGGTAACGGGACGCACCTGATGATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGc < 1:597007‑M1/149‑2 (MQ=255) gCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTACGCATTATACGcagtta > 1:265509‑M1/1‑143 (MQ=255) aaaTTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattc < 2:577181‑M1/149‑10 (MQ=255) aCCATCACCGAGCCCTCTGCATGTTTTGTATTGTTACGAGTCAGGGTGACGGGACGCTCCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcct < 2:462773‑M1/149‑17 (MQ=255) gCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgaca > 1:26448‑M1/1‑129 (MQ=255) cACCGAGCCGTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATACTGAAATCTCCGGCCTGAAACAAATGTGGCTGCGCATTATTCGcggttattcctatcctgacaa < 2:466552‑M1/149‑22 (MQ=255) cTGCAAGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatgg < 2:273025‑M1/149‑33 (MQ=255) tataGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttc < 1:32154‑M1/149‑45 (MQ=255) ataGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttcc < 1:188141‑M1/149‑46 (MQ=255) taGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttcca > 2:438301‑M1/1‑103 (MQ=255) taGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttcca < 2:576250‑M1/149‑47 (MQ=255) aGTTATGAGTCAGGGTAACGGGCCGCCACTGATTATTGCTACGGCCTCCAGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttatgcctatcctgacaaggcatcgatggctataatccttccac < 1:188477‑M1/149‑48 (MQ=255) cGAGGCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGGGGCATATGGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctc < 2:752878‑M1/149‑53 (MQ=255) gTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctcctt < 2:44109‑M1/149‑56 (MQ=255) tCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcctcgatggctataatccttccacctctccttt < 1:426942‑M1/149‑57 (MQ=255) tCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccccctctccttt > 2:281086‑M1/1‑93 (MQ=255) tCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttt > 2:34775‑M1/1‑93 (MQ=255) cAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctcctttt > 1:617107‑M1/1‑92 (MQ=255) aGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctcctttta > 1:408267‑M1/1‑91 (MQ=255) aCGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATATGGCTGCTCATTATACGcggttattcctatcctgacaagtcatcgacgcctctaatccttccccctctccttttataaaca > 2:715364‑M1/1‑85 (MQ=255) gCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatagcaaggttgcgtccacctctccttttataaacaggaacgt < 1:775807‑M1/149‑72 (MQ=255) ccTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtcta < 2:696959‑M1/149‑75 (MQ=255) attGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccg < 2:137959‑M1/149‑82 (MQ=255) tGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgca < 1:438301‑M1/149‑84 (MQ=255) cTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagt > 2:200655‑M1/1‑64 (MQ=255) tACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagta < 1:34775‑M1/149‑87 (MQ=255) aCGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctcctcttataaacaggaacgtctatgatccgcagtat > 2:321354‑M1/1‑62 (MQ=255) gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgat < 2:68584‑M1/81‑31 (MQ=255) gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgat > 1:68584‑M1/1‑51 (MQ=255) ttGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagtatgaccgcctacgcccggcgt > 1:764797‑M1/1‑43 (MQ=255) ttGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagtatgaccgcctacgcccggcgt < 1:293627‑M1/149‑107 (MQ=255) ttGAAATCTCCGGCTTGAAACAAATGAGGCTGCGCATTATACGcagttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctaggatccgcagtatgcccgcctacgcgcagcgc > 2:235276‑M1/1‑43 (MQ=255) taaatgcccgtcttgaAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagtatgaccgcctacgcccggcgtga < 2:736071‑M1/142‑109 (MQ=255) tctcCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagaatgacggcctacgcccgtcgtgaaatc > 2:176568‑M1/1‑37 (MQ=255) tcCGGCTTGAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagtatgaccgcctacgctcgccgtgaaatcaa > 2:771676‑M1/1‑35 (MQ=255) tcCGGCGAGAAACAGATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagtttgaccgcctaagcccgcggtacaatcaa > 2:536710‑M1/1‑35 (MQ=255) gAAACAAATGTGGCTGCGCATTTTACGcggttattcctttcctgacaatgcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagtatgaccgcctacgcccggcgtgaaatcaagggtgaat < 2:86090‑M1/149‑123 (MQ=255) gAAACAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagtatgaccgcctacgcccggcgtgaaatcaagggtgaat < 2:26448‑M1/149‑123 (MQ=255) aaaCAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagtatgaccgcctacgcccggcgtgaaatcaagggtgaatg > 1:486331‑M1/1‑26 (MQ=255) aCAAATGTGGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagtatgaccgcctacgcccggcgtgaaatcaagggtgaatggg > 1:319886‑M1/1‑24 (MQ=255) tgGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagtatgaccgcc < 1:691410‑M1/111‑95 (MQ=255) tgGCTGCGCATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagtatgaccgcc > 2:691410‑M1/1‑17 (MQ=255) cgcATTATACGcggttattcctatcctgacaaggcatcgatggatataatccttccccttctccttttataaacaggaacgtctatgatccgcagtatgaccgccgacgcccggcgtgaaatcaagggtgaatgggggagcgcaacctg < 2:10028‑M1/149‑139 (MQ=255) cATTATACGcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagtatgaccgcctacgcccggcgtgaaatcaagggtgaatggggaagcgcaacctggg > 1:198131‑M1/1‑9 (MQ=255) gcggttattcctatcctgacaaggcatcgatggctataatccttccacctctccttttataaacaggaacgtctatgatccgcagtatgaccgcctacgcccggcgtgaaatcaagggtgaatgggggagcgcaacctgggaaatgcgc > 1:374047‑M1/1‑1 (MQ=255) | GTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGGCATCGATGGCTATAATCCTTCCACCTCTCCTTTTATAAACAGGAACGTCTATGATCCGCAGTATGACCGCCTACGCCCGGCGTGAAATCAAGGGTGAATGGGGGAGCGCAACCTGG > NC_000913_3_bme_pgi/3816446‑3816741 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |