New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 311149 =351 (0.170)590 (0.330) 123/212 18.1 69.6% intergenic (‑72/‑242) JCVSYN2_01300/JCVSYN2_01305 hypothetical protein/30S ribosomal protein S21
?CP016816 = 311154 220 (0.120)intergenic (‑77/‑237) JCVSYN2_01300/JCVSYN2_01305 hypothetical protein/30S ribosomal protein S21
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 770 total aligned reads displayed.

AGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAG  >  CP016816/311027‑311281
                                                                                                                                              |                                                                                                                                            
 gTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atat                                                                                                                                             >  2:1251303/1‑128 (MQ=255)
  ttGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atata                                                                                                                                            >  2:405875/1‑128 (MQ=255)
  ttGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atata                                                                                                                                            >  1:4455025/1‑128 (MQ=255)
    gTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatata                                                                                                                                          >  1:1687290/1‑128 (MQ=255)
       ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACTATTCAAAAAATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑ataaatatat                                                                                                                                       >  2:1702439/1‑128 (MQ=255)
       ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatat                                                                                                                                       >  1:469555/1‑128 (MQ=255)
       ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatat                                                                                                                                       >  1:3755200/1‑128 (MQ=255)
            tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatata                                                                                                                                  >  1:2707761/1‑128 (MQ=255)
             attCCAAATTAAATTAAAATTGTTATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatat                                                                                                                                 <  1:1215338/126‑1 (MQ=255)
             aaTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatat                                                                                                                                 >  1:1374363/1‑128 (MQ=255)
             aaTCCAAATGAACTTAAAATTGTAATTAACTATTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑aaa‑‑‑‑atatatatatatatat                                                                                                                                 >  2:3168121/1‑128 (MQ=255)
              aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatata                                                                                                                                >  2:3478114/1‑128 (MQ=255)
              aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATACAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatata                                                                                                                                >  2:48793/1‑128 (MQ=255)
               taataattaaattaAAATTTTATTTATATTTTTAATTTTATACACATCTTTTTTAAAAATAAAATAATTTTTATATAATATTTAAAAAATATATAAAATA‑‑‑TATTTAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatat                                                                                                                               <  1:4366907/124‑1 (MQ=255)
               tCCAAATTAAAATATAATTTTAATAAAATTTTTCAATTTAAACACCCATAATTAAAAAATAAAATAATTGTTAAATACTATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatat                                                                                                                               <  1:2101890/128‑1 (MQ=255)
               tCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatat                                                                                                                               >  1:3481620/1‑128 (MQ=255)
               tCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatat                                                                                                                               >  1:2791/1‑128 (MQ=255)
               tCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatat                                                                                                                               >  2:2504359/1‑128 (MQ=255)
               acaaaaTGATCATAAATATTTATTTAAATTTTTCATTTTAAACACCAAATATTAAAAAAAAAAATATTTTTTAAATAAGTTTCAAAAAATATATAAAATA‑‑‑CATACTT‑‑‑‑‑‑‑‑aat‑‑‑‑atatatatatatatatat                                                                                                                               <  1:515019/125‑1 (MQ=255)
                ccAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATTACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑ttatatatatatatatatt                                                                                                                              >  2:3794522/1‑127 (MQ=255)
                ccAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATAATTTTTACATACGATTAAAAAAATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatata                                                                                                                              >  1:3002743/1‑128 (MQ=255)
                 cAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatat                                                                                                                             >  1:1920235/1‑128 (MQ=255)
                  aaaataaaatAAAATAGTAAATAACTTTTTAATTTTACACACACCATATTAAAAAAAAAAAAAAAATTTAAATAATATTCAAAACATATATAACATA‑‑‑CAATCAA‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatata                                                                                                                            <  2:643828/119‑1 (MQ=255)
                  aaaTCAACTAAAAATAGTAATAAACTTTTTCATTTTACACACAACATATTAAAAAATAAAATACATGTTACATACTATTCAAAACATATATAAAATA‑‑‑CATTCAA‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatata                                                                                                                            <  2:4172842/128‑1 (MQ=255)
                   aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatataa                                                                                                                           >  1:3286351/1‑127 (MQ=255)
                     tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAATTACTTGTTACATACGATTCATAACATATATAACATA‑‑‑CCTTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatatatat                                                                                                                         >  1:3068890/1‑127 (MQ=255)
                     tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatataaatatatatat                                                                                                                         >  2:1752984/1‑127 (MQ=255)
                       aacaaaaaaTTGTAATTAACTTTTTCAATTTACACACACAATATTAAAAAATAAAAAAATTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatatatatat                                                                                                                       <  2:1047181/123‑4 (MQ=255)
                       aaattATAATTGTTATTAAATTTTTCATTTTATACACACCTTATTAAAAAAAAAAATACTTGTTAGATACTATTCAATAAATATATAAAATA‑‑‑CATTAAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatatatatat                                                                                                                       <  1:3561879/125‑4 (MQ=25)
                        aatttataTTTTAATTAAATTTTTTTTTTTAAACAAAAATTATTAAATAATAAAATTGTTGTTACATAATATTAAAAAAATATATAAAATA‑‑‑TATTTAT‑‑‑‑‑‑‑‑aat‑‑‑‑atatatatatatatatatatatatata                                                                                                                      <  1:4530752/121‑5 (MQ=255)
                         cTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatatatatatat                                                                                                                     >  2:1187939/1‑123 (MQ=255)
                         atattaaTTTTTATTAAATATTTTATTTTAAACACACTTTATTAAAAAATAAAATATATGTTATAAACGATTCAAAACATATATAAAATA‑‑‑TATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatatatatatat                                                                                                                     <  1:1974695/123‑6 (MQ=255)
                           tAAAATTTTAATAAACTATTTCATTATAATAACACATTATTAAAAAATAAAATACATGTTACATACTATTCAAAAAAAATATAAAATA‑‑‑CAATCAA‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatatatatataatg                                                                                                                   <  2:2300622/128‑8 (MQ=255)
                           tAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatatatatataaag                                                                                                                   >  1:3675177/1‑121 (MQ=255)
                             aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATACAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatatatataattcaat                                                                                                                 >  1:615107/1‑119 (MQ=255)
                             aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatataaatatatatatatatatatatattt                                                                                                                 >  2:2927433/1‑119 (MQ=255)
                              aaTTTTATTTAAATTTTTATTTTTAAAAACAACTTATTAAAAAATAAAATAATTTTTATATAATATTCAAAAAATATATAAAATA‑‑‑AATTATT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatatatatatataatgc                                                                                                                <  1:4081427/128‑11 (MQ=255)
                                ttGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑tat‑‑‑‑atatatatatatatatatatatatatataattata                                                                                                              >  1:3972928/1‑116 (MQ=255)
                                ttGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATAAATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATataaata‑‑‑‑‑aataaataaata                                                                                                         >  2:2691570/1‑117 (MQ=255)
                                        aaCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCATTA‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑TCA‑‑‑ATAAGTaaaaaaa                                                                                            >  2:3239467/1‑124 (MQ=255)
                                         aCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCATTATA‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATATAAATGa                                                                                             >  2:3861711/1‑128 (MQ=255)
                                               taaTTTTACACAAAACTTTTTAAAAAATAAAATAATTTTTACATAATATTAAAAAAATATATAACATA‑‑‑CATTCATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAat                                                                                         <  1:3806283/126‑1 (MQ=255)
                                                    ttaaaaaaaacTTATTANAAAATAAAATTATTTTTTTATAATATTATAAAAATATATAACATATATTATTTATA‑‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGtat                                                                                  <  1:668894/118‑1 (MQ=255)
                                                    ttAAACAACCATTATTAAAAAATAAAATAATTGTTAAATACTATTCAAAACATATATAACATA‑‑‑CATTCATTATA‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGtat                                                                                  <  1:1559260/128‑1 (MQ=255)
                                                     taaacaaaacTTATTAAAAAATTATATATTTGTTACATAAGATTCAAAAAATATATAACATA‑‑‑CATTCATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGta                                                                                   <  2:4293855/119‑1 (MQ=255)
                                                          actacTTATTAAAAAATAAAATATTTTTTAGATATTATTAAAAAAATATATAACATA‑‑‑AATTAATTATATATATAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTataa                                                                                <  1:1458218/124‑1 (MQ=16)
                                                          aaccgttattaTATAATAAAATAATTTTTACATACGATTAAAAAAATATATAACATA‑‑‑AATTTATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑TTATGTAAATGAAAATATGGTataata                                                                              <  1:565004/123‑1 (MQ=255)
                                                           aacattattaAAAAATAAAATAATTTTTAAATAATATTATAAAAATATATAACATA‑‑‑TATTTATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAg                                                                             <  2:67683/124‑1 (MQ=255)
                                                                   taAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑ATAAAGCA‑‑‑ATATATAAAAAAAAATATTGTaaaataaaaacatttta                                                                   >  2:1473630/1‑117 (MQ=255)
                                                                   taAAAAATAAAATAATTTTTAAATAATATTAAAAACATATATAACATA‑‑‑CATTCATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGtt                                                                    <  2:1339732/128‑1 (MQ=255)
                                                                   aaaaaaaTAAAATAATTGTTACATAATATTAAAAAAATATATAAAATA‑‑‑AATTCATTATA‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTta                                                                  <  1:4320819/127‑1 (MQ=255)
                                                                    aaaaaaTAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCATTATA‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GAA‑‑‑ATATGTAAATGAAAATATGGTATAATAGAAACAGTatat                                                                 >  1:1313070/1‑128 (MQ=37)
                                                                      aaaatataatAATTTTTAAATAAGATTCAAAAAATATATAACAAA‑‑‑AATTCATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                                 <  2:3361883/128‑1 (MQ=255)
                                                                      aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATATATTAT‑‑‑TCA‑‑‑ATATTTAATTTAAAATTTGGTATAATAGCAAGAGTATATaa                                                               >  1:3376440/1‑128 (MQ=255)
                                                                           aaaataCTTTATAAATAATATTCAAAACATATATAACATA‑‑‑AATTCATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                            <  2:1626957/128‑1 (MQ=255)
                                                                           aaaataATTTTTATATAATATTCAAAAAATATATAATATA‑‑‑TATTAATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                            <  1:1609187/128‑1 (MQ=19)
                                                                            aaataCTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCATTATA‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaa                                                         <  2:3912409/128‑1 (MQ=255)
                                                                            aaataATTGTTACATACGATTAAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaaaa                                                     <  1:179007/128‑1 (MQ=255)
                                                                              ataCTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCATTATA‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑TAA‑‑‑ATATATAAATTAAAATATTATATAATATCAAAATTTTATATATTaaaaa                                                       >  2:1960333/1‑128 (MQ=19)
                                                                                aatttttACATAATATTCAAAACATATATAAAATA‑‑‑CATTCATTATA‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaaaa                                                     <  2:57004/123‑1 (MQ=255)
                                                                                aatttttACATAATATTATATACATATATAAAATA‑‑‑AATTCATTATA‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaaaa                                                     <  2:1135491/123‑1 (MQ=255)
                                                                                 cTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GAA‑‑‑ATATATAAATGAAAATATATTATAATATCAAAAGTTTATAAATTaaaaaa                                                      >  2:3712971/1‑128 (MQ=19)
                                                                                  ttGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCATTATATATATAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑TCA‑‑‑ATATATAAATAAAAATATTTTATAATATAAACAGTTTATAAAGTaaaaa                                                       >  2:4378464/1‑128 (MQ=255)
                                                                                  ttGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑AAA‑‑‑ATATTTAAATTAAAATATTATATAATATAAACAATTTATAAAATaaaaaaa                                                     >  1:2636240/1‑128 (MQ=255)
                                                                                  ttGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATATTTTAT‑‑‑GAT‑‑‑ATATATAAATAAATATATAATATAATACAACAAGTTTATATATAAAAAAAATa                                                   >  1:1098430/1‑128 (MQ=255)
                                                                                  ttGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATATAT‑‑ATT‑‑‑TAA‑‑‑ATATGTAAATTAAAATATGTTATAATAGCTACCGTTTATAAATTAAAAAAATa                                                   >  1:724481/1‑128 (MQ=255)
                                                                                   tGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GAA‑‑‑ATATTTAAATGAAAATATGTTATAATAGCAAAAGTTTATAAATTAAAAAAAt                                                    >  1:2186214/1‑128 (MQ=25)
                                                                                      tACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATATATATATT‑‑‑TAA‑‑‑ATATTTAAATTAAAATATGTTATAATAGAAAAAGTATATAAATTAAAAAAATatt                                                 >  2:4518477/1‑126 (MQ=255)
                                                                                        cATACGATTCAAAACATATATAGCATA‑‑‑CATTCATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑TAA‑‑‑ATATATAAAATAAAATATTTTATAATATCAAACTTTTATAAATAAAAAAAATAGTaa                                               >  1:100063/1‑128 (MQ=16)
                                                                                           aataTTAAAAACATATATAACATA‑‑‑GATTCATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                            <  2:3646802/125‑1 (MQ=255)
                                                                                           aCGATTCAAAACATATATAACATA‑‑‑CATTCATTATA‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAAtata                                          <  2:3538599/128‑1 (MQ=255)
                                                                                              aTTCAAAACATATATAAAATA‑‑‑CATTCATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtac                                         <  2:3965277/128‑1 (MQ=255)
                                                                                                tCAAAACATATATAACATA‑‑‑CATTCATTATATA‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑AAA‑‑‑ATATTTAAATTAAAATATTTTATAATATCAAGATTTAATAAAATAAAAAAATAGtatataatcta                                       >  2:3006825/1‑123 (MQ=255)
                                                                                                  aaaaCATATATAACATA‑‑‑CATTCATTA‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑TCA‑‑‑ATATGTAAATTAAAATATTTTATAATATCAACAGTTTATAAATTAAAAAAATATTAAATATACTAattatt                                 >  1:4235332/1‑128 (MQ=255)
                                                                                                   aaaCATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATATAT‑‑ATAAATAA‑‑‑ATATGTAAATTAAAATATTTTATAATATAAACAGTTTATAAAGTAAAAAAATATTAAataaaaaaatt                                    >  2:873663/1‑120 (MQ=255)
                                                                                                     aCATATATAACATA‑‑‑CATTCATTATA‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GAA‑‑‑ATATATAAATAAAAATATGTTATAATAGCAACGATATATAAAGTAAAAAAATAATAAATATACAAATTaata                                >  1:3147701/1‑125 (MQ=19)
                                                                                                     aCATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑TATATAAATATATATATATATATATATATA‑‑‑‑‑AA‑‑‑ACA‑‑‑ATATATAAAAAAAAATATCTTATAATATAAAAAGTATAAAAAATAAAAAAATAATAAATAAAATACATaata                                >  2:1877541/1‑125 (MQ=255)
                                                                                                      cATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATAT‑‑‑‑ATAAATAA‑‑‑ATATTTAAATGAAAATATGTTAATATATAAACATTTTATAAATAAAAAAAATATAAAATAAACTACTtatata                               >  2:2240647/1‑128 (MQ=255)
                                                                                                        tatataACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATATAT‑‑AT‑‑‑AAATATATATATAAAATAAAATATTTTATAATAACAAAATTATATAAATTAAATATATATTAAATATAATAattattaa                               >  2:2616457/1‑126 (MQ=255)
                                                                                                        tatataACATA‑‑‑CAATCATTA‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AA‑‑‑GAA‑‑‑ATATTTAAAAGAAAAAATGGTAAAATAGCAACAGTTTATAAAAAAAAAATATATTATATATACTAGTAATTTACtat                           >  1:792932/1‑127 (MQ=255)
                                                                                                                         acattcattatatat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑GAA‑‑‑ATATGTAAAAGAAAATATTTTATAATATAAACATTATATAAATTAAAAAAATAATAAATATACTACTTAATTACTAAAAAAATCt                   >  2:2080625/13‑128 (MQ=19)
                                                                                                                            ttcattatatat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑TT‑‑‑GCT‑‑‑ATATGTAAAATAAAATATTTTATTATAGAAAACTTTTATAAAGTAAAAAAATAGTATATATACTACTTATTTAAAAATAAAATCTAtt                >  2:1012343/10‑128 (MQ=25)
                                                                                                                            ttcattatatat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑TCA‑‑‑ATATGTAAAAAAAAATATGTTATAATAACAACAGTTTATAAAATAAAAAAATATTATATATAATAATTATATAATAAAAAAATATAtt                >  1:4030175/10‑128 (MQ=19)
                                                                                                                             tttatatatat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAttt               <  1:2302220/120‑1 (MQ=255)
                                                                                                                             tcattatatat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAttt               <  2:771911/120‑1 (MQ=255)
                                                                                                                             attatatatat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑TCA‑‑‑ATATGTAAATGAAAATATGTTATAATAGAAACAGTTTATAAAGTAAAAAAATAGTAAATATACTAATTATTT‑‑TAATATAAAATAttttt             >  2:2412483/9‑128 (MQ=255)
                                                                                                                               tatatatat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑TAA‑‑‑ATATTTAAATAAAAATATTGTATAATAGCAAAAATATATAAATAAAAAAAATAGTAAATATAAAAATTATTTAATAATAATATATAtattt             >  1:2216091/7‑128 (MQ=16)
                                                                                                                               attatatat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAttttt             <  2:14380/122‑1 (MQ=255)
                                                                                                                                 tatatat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGTTATAATAGCAACCTTTTATAAAGTAAAAAAATAGTAAATATAATACATATTAACTAAAAAAATCtattattat           >  1:2831053/5‑128 (MQ=255)
                                                                                                                                 tatatat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGTTATAATAGAAACATTTTATAAAGTAAAAAAATATAATATATACTACTTATTTAATAATAAAATATATTtttat           >  2:1581914/5‑128 (MQ=255)
                                                                                                                                   tatat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATTAAAATATGGTATAATAGAAAACTTTTATAAAGTAAAAAAATAGTATATATAATACTTATTTAATAATAAAATCTATTtttatat         >  1:2551401/3‑126 (MQ=255)
                                                                                                                                   tatat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTtttattt         <  1:3901958/126‑1 (MQ=255)
                                                                                                                                    atat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATTTAAATTAAAATATGTTATAATAGCAACCTTTTATAAAATAAAAAAATATTAAATATAATACTTATTTACTAATAAAATCTATTtttattta        >  1:4140224/2‑128 (MQ=255)
                                                                                                                                    atat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTATATGAAAATATGGTATAATAGCAACCGTTTATAAATTAAAAAAATAGTAAATATACTAATTATTTACTAATAAAATATATTtatatata        >  2:3074115/2‑128 (MQ=255)
                                                                                                                                     tat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑TCA‑‑‑ATATAAAAATGAAAATATTATATAATAGCAAGCTTTTAAAAAATAAAAAAATAGTATATATACAAATAATATTCAAATAATATCTATTTTTATTTaa       >  1:871504/1‑128 (MQ=255)
                                                                                                                                     tat‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTaa       <  1:2434077/128‑1 (MQ=255)
                                                                                                                                      at‑‑‑‑atatatatatatatatatatata‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTaaa      <  2:2804352/128‑1 (MQ=255)
                                                                                                                                            atatatatatatatatatatata‑‑‑‑‑AA‑‑‑TAT‑‑‑ATATGTAAATGAAAATATTTTATAATAGCAACAGTTTATAAACAAAAAATATATTAAATATAATAATTATTAAATAATAAAATATATTTTTATTTaaaaa    >  1:3538536/1‑128 (MQ=255)
                                                                                                                                             tatatatatatatatatatata‑‑‑‑‑AT‑‑‑TCA‑‑‑ATATGTAAATTAAAATATTTTATAATATAAAAAGTTTATAAATAAAAAAAATAATAAATAAAATAATTATAAACTAAAAAAATCTATTTTTATATaaaaaa   >  2:2153284/1‑128 (MQ=255)
                                                                                                                                             tatatatatatatatatatata‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTaaaaaa   >  2:4009682/1‑128 (MQ=255)
                                                                                                                                              |                                                                                                                                            
AGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATA‑‑‑CATTCAT‑‑‑‑‑‑‑‑TAT‑‑‑‑ATATATATATATATATATATATA‑‑‑‑‑AT‑‑‑GCA‑‑‑ATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAAAG  >  CP016816/311027‑311281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.