| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | 311149 = | 351 (0.170) | 590 (0.330) | 123/212 | 18.1 | 69.6% | intergenic (‑72/‑242) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | = 311154 | 220 (0.120) | intergenic (‑77/‑237) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 754 total aligned reads displayed.
GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAA > CP016816/311022‑311277 | gTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATAcattc‑‑‑at‑‑‑‑‑‑‑‑t > 1:559439/1‑128 (MQ=255)gTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATAcattc‑‑‑at‑‑‑‑‑‑‑‑t > 2:4155464/1‑128 (MQ=255)gTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCACTAATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATAcattc‑‑‑at‑‑‑‑‑‑‑‑t > 2:195061/1‑128 (MQ=255) cAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atat > 2:756046/1‑128 (MQ=255) cAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atat > 2:1354518/1‑128 (MQ=255) gTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatat > 1:4319583/1‑128 (MQ=255) gTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTATTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑a‑‑‑‑aaatatata > 1:3095972/1‑128 (MQ=255) taataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatat < 2:1195473/128‑1 (MQ=255) ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatat > 1:3755200/1‑128 (MQ=255) ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACAGATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatat > 2:1260073/1‑128 (MQ=255) aaTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatat > 2:853340/1‑128 (MQ=255) aTCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATACAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatata > 2:48793/1‑128 (MQ=255) ccAAATTAAATTTAAATTTTAAATAAATTTTTAATTTTAAACACAACTTATTTAAAAATAAAATAATTTTTATATAATATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata < 1:2191130/128‑1 (MQ=255) ccAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata > 2:1746000/1‑128 (MQ=255) ataaaTGAAATTAAAATTGTATATAAATTTTTAATTTTACACACCCCTTATTAAAAAATAAAATATTTTTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata < 1:3560810/126‑1 (MQ=255) caaatcaaatTAATATTGTAATTAACTATTTCAATTTACACACACCTTATAAAAAAAAAAAATACATGTTACAAACGAATCAAAACATATATAACATACACAC‑‑‑AA‑‑‑‑‑‑‑‑a‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑t < 2:2284420/128‑1 (MQ=255) cAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑t > 1:1920235/1‑128 (MQ=255) aaaataaaatAAAATAGTAAATAACTTTTTAATTTTACACACACCATATTAAAAAAAAAAAAAAAATTTAAATAATATTCAAAACATATATAACATACAATC‑‑‑AA‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑ta < 2:643828/119‑1 (MQ=255) aaaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑ta > 2:3855133/1‑128 (MQ=255) aaTTAACTTAAAATTTTTATTAAATTTTTCATTTTAAACACAAATTATTAAAAAATAAAAAAATTTTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tat < 1:3061653/128‑1 (MQ=255) attaaCTTAAAAATGTTATTTATTTTTTTATTTTTAAAACACATTATTAAAAAAAAAAATAATTTTTATATAATATTCAAAAAATATATAAAATACATTA‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata < 1:655300/125‑1 (MQ=255) aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata > 2:2077452/1‑128 (MQ=255) aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata > 2:4301871/1‑128 (MQ=255) tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatat > 1:3821294/1‑127 (MQ=255) tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAAGACTTGTTACATACGATTCAAAACATATATCACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatag > 1:4448558/1‑127 (MQ=255) gAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACAATC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatata > 2:3482884/1‑126 (MQ=255) aacaaaaaaTTGTAATTAACTTTTTCAATTTACACACACAATATTAAAAAATAAAAAAATTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatatat < 2:1047181/123‑4 (MQ=255) taagatatttGTATTTAAATTTTTTATATTATACACAAATTATTAAAAAATAAAATAATTTTTAAATATTATTAAAAAAATATATATAATACATTA‑‑‑TT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatatata < 1:770290/120‑5 (MQ=255) aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatatata > 2:4007856/1‑124 (MQ=255) aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑ta < 2:3910268/122‑1 (MQ=255) aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑ta > 1:3910268/1‑122 (MQ=255) cTTAAAATTTTATTTATATTTTTTTTTTTAAACACCCCTTATTATAAAATAAAATACTTGTTAAATACGATTCAAAAAATATATAACATACATTA‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatatatat < 1:3966870/128‑6 (MQ=37) cTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatatatat > 1:3351322/1‑123 (MQ=255) attAAAATTTTATTTATATTTTTTATTTTAAAAAAAAATTATTAAAAAATAAAATAATTTTTATATAATATTAAAAAAATATATAAAATAAATTA‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatatatat < 1:459857/127‑6 (MQ=12) ttAAAATTGTAATTAAATTTTTATTTTTATACACACCTTATTAAAAAATAAAATACTTGTTAAATAAGATTTAAAAAAAATATAAAATATATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatatatata < 1:3434007/128‑7 (MQ=255) tAAAATTTTAATTAATTTTTTATATTTAAACACACATTATAAAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatatatataa < 1:1360509/128‑8 (MQ=255) tAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatatataaag > 1:3675177/1‑121 (MQ=255) aaaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatatatatata > 1:1576789/1‑120 (MQ=255) aaaTTTTATTTAAATTTTTAATTATACACACCCATTATTAAAAAATAAAATAATTTTTATATAATATTCAAAAAATATATAAAATAAATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatatatatataa < 1:4361207/128‑10 (MQ=255) aaaTTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAatat < 1:2707280/128‑1 (MQ=255) aaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATa‑‑‑‑‑aaaagcaata > 2:3245268/1‑119 (MQ=255) ttGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatatatataaaaata > 2:1473307/1‑116 (MQ=255) ttGTAATTAACTTTTTCATTTTACACACAACTTATTAAAAAATAAAATACTTGTTACATAATATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tatatataatgcaata < 2:1572331/128‑13 (MQ=255) aaatttttCATTTTAAACACAACATATTAAAAAAAAAAATAATTTTTACATACGATTCAAAACATATATAACATACATTC‑‑‑ATTATA‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATg < 1:859099/125‑1 (MQ=255) cTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑ATTA‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑AAAATATTTAAATTaaaa > 1:1207539/1‑128 (MQ=255) tttAATTTTACACACAACTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTC‑‑‑ATTATA‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAat < 2:1673017/128‑1 (MQ=255) cacacaACTTATTAAAAAATATAATAATTTTTACATACTATTCAAAAAATATATAACATACATTC‑‑‑ATTATA‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTataat < 2:2795934/128‑1 (MQ=255) acacaaattattaAAAAATAAAATAATTGTTACATAATATTAAAAAAATATATAAAATAAATTC‑‑‑ATTATATA‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTataa < 1:1698721/121‑1 (MQ=255) caacTTATTAAAAAATAAATTATTTTTTATATAATATTAAAAAAATATATAAAATATATTC‑‑‑ATTATATA‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAg < 1:3263287/125‑1 (MQ=255) aaataattaAAAAATAAAATAATTTTTATATAAGATTCAAAAAATATATAACATAAATTC‑‑‑ATTATATA‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGc < 2:4054776/123‑1 (MQ=255) attaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATATATATTTATA‑‑‑‑‑A‑T‑‑‑TCAATATATAAATGAAAATATTATATAATAGaaaact > 2:2926613/1‑125 (MQ=255) ttaAAAAATAAAATAATTTTTAAATAAGATTAAAAAAATATATAACATAAATTC‑‑‑ATTATA‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGttt < 2:100235/128‑1 (MQ=255) aaaaaaTAATATACTTTTTATATAATATTCAAAAAATATATAAAATATATTC‑‑‑ATTATATA‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGttt < 1:2735172/128‑1 (MQ=255) aaaaaaTAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATAT‑‑‑‑A‑TAAAGCTATATGTAAATTAAAATATGTTATAATAGCAAC‑CGTTtat > 2:2376004/1‑128 (MQ=255) aaaatataatAATTTTTAAATAAGATTCAAAAAATATATAACAAAAATTC‑‑‑ATTATATA‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTtat < 2:3361883/128‑1 (MQ=255) aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑ATTATATA‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GAAATATTTAAATTAAAATATGTTATAATAGAAAC‑AGTTTATaa > 1:709266/1‑128 (MQ=25) taaaataCTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑ATTATA‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑TCAATATATAAATAAAAATATTTTATAATAGCAAA‑AGTTTATAAAGTa > 1:1981757/1‑128 (MQ=255) aaataATTGTTACATACGATTAAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTaaaaaaa < 1:179007/128‑1 (MQ=255) aatttttACATAATATTCAAAACATATATAAAATACATTC‑‑‑ATTATA‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTaaaaaaa < 2:57004/123‑1 (MQ=255) aatttttACATAATATTATATACATATATAAAATAAATTC‑‑‑ATTATA‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTaaaaaaa < 2:1135491/123‑1 (MQ=255) aattGATACATAATATTTAAAAAATATATAACATACATAC‑‑‑ATTATATA‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTaaaaa < 2:3171822/126‑1 (MQ=255) cTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑ATTATA‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑TATATATTTAAATTAATATATTTTATTATAACAAC‑ATTTTATAAATAAAAAAAAt > 1:499773/1‑128 (MQ=255) cTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATATAT‑‑A‑TAAAAAAATATTTAAATGAAAATATTTTATAATAGAAAC‑AATTTATAAATTaaaaaa > 1:2309411/1‑128 (MQ=255) tttttagataataTTTAAAACATATATATCAAACATTA‑‑‑ATTA‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTAAAAAAATAGt < 1:4069959/116‑1 (MQ=255) ttGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑ATTATATATAT‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑TCAATATATAAATAAAAATATTTTATAATATAAAC‑AGTTTATAAAGTaaaaa > 2:4378464/1‑128 (MQ=255) ttGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATATTTT‑A‑T‑‑‑GATATATATAAATAAATATATAATATAATA‑CAACAAGTTTATATATAAAAAAAATa > 1:1098430/1‑128 (MQ=255) gTTACATAATATTCTAAAAATATATAAAATACATTCTTTATA‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTAAAAAAATAGt < 2:1622711/128‑1 (MQ=255) tACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATATATATATT‑‑‑TAAATATTTAAATTAAAATATGTTATAATAGAAAA‑AGTATATAAATTAAAAAAATatt > 2:4518477/1‑126 (MQ=255) tACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATATAT‑‑A‑TAAATCAATATATAAATCAAAATATGATATAATATAAAA‑AGTTAATAAAATAAAAAAATAga > 1:1610972/1‑127 (MQ=255) cATACGATTCAAAACATATATAGCATACATTC‑‑‑ATTATATA‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑TAAATATATAAAATAAAATATTTTATAATATCAAA‑CTTTTATAAATAAAAAAAATAGTaa > 1:100063/1‑128 (MQ=16) tagATTCAAAAAATATATAAAATAAATTCA‑‑ATA‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTAAAAAAATAGTAAATAtact < 2:2119117/126‑1 (MQ=255) atcaTTAAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑TATAAATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTAAAAAAATAGTAAAtata < 1:1283109/125‑1 (MQ=255) aataTTAAAAACATATATAACATAGATTC‑‑‑ATTATATA‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTAAAAAAATAGTAAata < 2:3646802/125‑1 (MQ=255) aCGATTAAAAACATATATAACATACATTA‑‑‑ATTATATA‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTAAAAAAATAGTAAata < 2:3793600/128‑1 (MQ=37) cGATTCAAAACATATATAACATACATTC‑‑‑ATTATATA‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATTAAAATATGTTATAATAGCAAC‑ATTTTATAAAGTAAAAAAATAGTAAatat > 2:3585024/1‑128 (MQ=255) cGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATAT‑‑‑‑ACT‑‑‑GCAATATGTAAATGAAAATATGTTATATTAGAAAA‑CGTTTATAAATAAAAAAAATAGTATATataata > 1:2223403/1‑128 (MQ=255) gATTAAAAACATATATATCATACATTA‑‑‑ATTATATA‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTAAAAAAATAGTAAAtata < 1:282889/128‑1 (MQ=37) ttCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATATATATA‑TAAATCAATATATAAATAAAAATATTTTATAATATCAAC‑ATTATATAAAGTAAAAAAATAAAAAAtata > 1:4136508/1‑128 (MQ=255) aaaaCATATATAACATACATTC‑‑‑ATTATATA‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GAAATATGTAAATGAAAATATGGTATAATAGCAAC‑ATTTTATAAAGAAAAAAAATATTAAATAaactaat > 2:2239500/1‑126 (MQ=25) aaaCATATATAACATACATTC‑‑‑ATTATA‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑TCAATATTTAAATGAAAATATTTTATAATATCAAC‑CTTTTATAAATTAAAAAAATATTAAATATACTAATTAt > 1:4022519/1‑128 (MQ=255) aaaCATATATAACATACATTC‑‑‑ATTATA‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑TAAATATGTAAATGAAAATATTGTATAATATCAAA‑CGTTTATAAAATAAAAAAATATTAAATATACTAATTAt > 1:591121/1‑128 (MQ=25) tatataACATACATTC‑‑‑ATTATA‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑TAAATATGTAAATTAATATATTTTATAATAGAAAG‑ATTATATAAATTAAAAATATAGTAATTATAAGACATAttatct > 2:1857500/1‑124 (MQ=12) tatataACATACATTC‑‑‑ATTATA‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GAAATATGTAAATGAAAATATTTTATAATAGCAAC‑AGTTTATAAATTAAAAAAATAGTAAATATAATACTTATTTaat > 1:3526942/1‑126 (MQ=37) acataatgc‑‑‑at‑‑‑‑‑‑‑‑t‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑T‑A‑‑‑TATATATTAAAAAAAAAATATATTAAAATAACAAA‑AATTTATAAATTATAAAAATAAAAAATATAATACTTATTAaaatataaaatata > 1:4515018/9‑128 (MQ=2) attatttatatat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt < 1:2983076/116‑1 (MQ=255) acattcattatat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑A‑‑‑AAAATATTTATATGAAAATATTGTATAATAGCAAC‑AGTATATATAATAAAAAAATAGAAAATATACTAATTATTAAATAAAAAAATCt > 2:2587969/13‑128 (MQ=16) tatatatat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑T‑‑‑TAAATATATAAATAAAAATATGTTATAATATCAAA‑CTTATATAAAGAAAAAAAATATTAAATATAATACATATTTAAAAATAAAATCTAttt > 1:2622936/9‑128 (MQ=19) attatatat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑T‑‑‑GATATATGTATATTATAATATTATATTATATCAAG‑ATTTTATAAAATAAAAAAATATAAAATATAAGAAATATTTTCTTATAATATATAttt > 2:2485198/9‑128 (MQ=255) attatatat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑A‑‑‑TCAATATTTAAAATAAAATATTTTATAATATAAAA‑AGTTTATAAATTAAAAAAATATAAAATATAATATTTATATAATAATAAAATATAttt > 2:684126/9‑128 (MQ=255) tatatat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑T‑‑‑GCAATATGTATATGAAAATATGGTATAATAGAAAC‑AGTTTATAAAGTAAAAAAATATTATATATAATACTTATTTAATAATAAAATCTAttttt > 2:3953366/7‑128 (MQ=255) tatatat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑T‑‑‑GAAATATTTAAATGAAAATATTGTATAAGAGAAAC‑AGTTTATAAAATAAAAAAATATAAAATATACTACTTATTTAATTATAATATCTAttttt > 2:2997825/7‑128 (MQ=25) attatat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAttttt < 2:14380/122‑1 (MQ=255) attatat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑T‑‑‑GAAATATGTAAATTAAAATATTTTATAATATAAAC‑ATTTTATAAATTAAAAAAATATTAAATATAATAATTATTTAATAATAAAATCTAttttt > 2:3688968/7‑128 (MQ=25) attatat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑A‑‑‑GAAATATGTAAATGAAAATATGTTATAATATCAAC‑AGTATATAAAAAAAAAAAATAGTAAATAAACTAATTATATAATAATAAAATCTAttttt > 1:4203691/7‑128 (MQ=255) atatat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑T‑‑‑GAAATATGTAAATTAAAATATGTTATAATAGCAAC‑CTTATATAAAATAAAAAAATAATAAATAAACTACATATTAACTAATAAAATCTAATttta > 1:2111706/6‑128 (MQ=37) attat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTtttat < 2:2672144/124‑1 (MQ=255) tat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATTAAAATATGGTATAATAGAAAA‑CTTTTATAAAGTAAAAAAATAGTATATATAATACTTATTTAATAATAAAATCTATTtttatat > 1:2551401/3‑126 (MQ=255) tat‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑A‑‑‑TAAATATGTAAATGAAAATATGTTATAATAGAAAC‑ATTATATAAAGAAAAAAAATATTAAATATTATAATTATTTAATAATAAAAAATATTtttatat > 1:1429623/3‑126 (MQ=255) at‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑T‑‑‑GCAATATGTATATGAAAATATGGTATAATAGCAAC‑CGTTTATAAATTAAAAAAATAGTAAATATACTAATTATTTACTAATAAAATATATTtatatata > 2:3074115/2‑128 (MQ=255) t‑‑‑‑atatatatatatatatatata‑‑‑‑‑‑tata‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTaa < 1:2434077/128‑1 (MQ=255) | GTACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTC‑‑‑AT‑‑‑‑‑‑‑‑T‑‑‑‑ATATATATATATATATATATA‑‑‑‑‑‑TATA‑‑‑‑‑A‑T‑‑‑GCAATATGTAAATGAAAATATGGTATAATAGCAAC‑CGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAA > CP016816/311022‑311277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |