mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.31.0 revision 69e7c3c0fa11
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 79 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 202,485 | 0 | T | . | 74.5% | 335.0 / inf | 287 | intergenic (+263/‑412) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 87,902 | 1 | . | T | 65.6% | 2420.6 / inf | 1180 | intergenic (+29/‑831) | JCVSYN2_00345/JCVSYN2_00350 | hypothetical protein/50S ribosomal protein L31 |
| * | CP016816 | 203,895 | 1 | . | T | 60.1% | 1020.0 / inf | 542 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 165,250 | 0 | T | . | 58.6% | 244.9 / inf | 1018 | intergenic (+214/‑328) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 202,486 | 0 | T | . | 57.3% | 110.8 / inf | 287 | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 105,339 | 0 | T | G | 56.4% | 1024.0 / inf | 986 | intergenic (+834/+92) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 202,494 | 0 | A | T | 56.1% | 21.1 / 201.3 | 285 | intergenic (+272/‑403) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 34,945 | 1 | . | A | 51.0% | inf / inf | 1101 | intergenic (+49/+117) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH |
| * | CP016816 | 420,234 | 1 | . | T | 49.5% | inf / inf | 807 | intergenic (‑517/+326) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 420,253 | 0 | C | A | 47.2% | 613.9 / inf | 1064 | intergenic (‑536/+307) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 202,477 | 0 | C | A | 45.8% | 226.4 / 185.1 | 368 | intergenic (+255/‑420) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,481 | 0 | C | A | 44.7% | 195.3 / 85.8 | 311 | intergenic (+259/‑416) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 34,945 | 2 | . | A | 40.8% | 450.7 / inf | 1101 | intergenic (+49/+117) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH |
| * | CP016816 | 203,912 | 0 | G | T | 37.5% | 858.6 / 199.5 | 675 | intergenic (+296/+162) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 420,271 | 0 | G | T | 36.6% | 1337.9 / 215.3 | 1055 | intergenic (‑554/+289) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 76,878 | 0 | G | T | 35.7% | 2290.1 / inf | 1408 | intergenic (‑127/+58) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein |
| * | CP016816 | 203,952 | 0 | C | A | 34.2% | 1336.3 / 163.9 | 834 | intergenic (+336/+122) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,480 | 0 | T | A | 34.1% | 208.9 / 128.4 | 335 | intergenic (+258/‑417) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 420,278 | 0 | C | A | 33.6% | 1534.1 / 179.7 | 1062 | intergenic (‑561/+282) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 34,945 | 0 | G | A | 33.3% | 1438.3 / inf | 1291 | intergenic (+49/+117) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH |
| Marginal new junction evidence (lowest skew 10 of 175 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | = 34945 | 554 (0.350) | 779 (0.450) +AAA |
138/216 | 15.1 | 56.3% | intergenic (+49/+117) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH |
| ? | CP016816 | 34946 = | 608 (0.340) | intergenic (+50/+116) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH | |||||
| * | ? | CP016816 | = 437880 | 593 (0.430) | 405 (0.230) +ATAT |
87/188 | 25.7 | 34.8% | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | 437881 = | 802 (0.450) | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | = 34944 | 765 (0.430) | 703 (0.400) +TAA |
96/246 | 33.3 | 48.5% | intergenic (+48/+118) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH |
| ? | CP016816 | 34945 = | 765 (0.430) | intergenic (+49/+117) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH | |||||
| * | ? | CP016816 | = 203895 | 388 (0.250) | 223 (0.130) +TTT |
80/214 | 33.5 | 34.3% | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| ? | CP016816 | 203896 = | 431 (0.240) | intergenic (+280/+178) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase | |||||
| * | ? | CP016816 | 165253 = | 1148 (0.640) | 186 (0.120) | 75/220 | 36.5 | 16.2% | intergenic (+217/‑325) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | = 165249 | 919 (0.590) | intergenic (+213/‑329) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | = 87902 | 962 (0.610) | 309 (0.180) +TTT |
71/216 | 37.4 | 22.3% | intergenic (+29/‑831) | JCVSYN2_00345/JCVSYN2_00350 | hypothetical protein/50S ribosomal protein L31 |
| ? | CP016816 | 87903 = | 1117 (0.620) | intergenic (+30/‑830) | JCVSYN2_00345/JCVSYN2_00350 | hypothetical protein/50S ribosomal protein L31 | |||||
| * | ? | CP016816 | = 420234 | 656 (0.420) | 247 (0.140) +TTT |
65/212 | 39.2 | 25.3% | intergenic (‑517/+326) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| ? | CP016816 | 420235 = | 734 (0.410) | intergenic (‑518/+325) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr | |||||
| * | ? | CP016816 | 437885 = | 1171 (0.650) | 78 (0.050) | 58/204 | 40.8 | 7.9% | intergenic (‑189/+233) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437880 | 876 (0.600) | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 117946 = | 2115 (1.180) | 75 (0.050) | 54/212 | 44.2 | 4.1% | intergenic (+67/+792) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease |
| ? | CP016816 | = 117942 | 1745 (1.160) | intergenic (+63/+796) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease | |||||
| * | ? | CP016816 | = 202486 | 108 (0.060) | 260 (0.150) | 65/252 | 45.9 | 67.3% | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| ? | CP016816 | 202490 = | 145 (0.080) | intergenic (+268/‑407) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein | |||||