mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 37.0% | 37.7 / 40.5 | 49 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 24 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 89 (0.970) | 18 (0.210) | 16/568 | 6.8 | 19.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 66 (0.760) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 92 (1.010) | 11 (0.130) | 10/568 | 9.2 | 12.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 67 (0.770) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1096961 = | 89 (0.970) | 28 (0.420) | 4/440 | 10.5 | 33.7% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 45 (0.670) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 4542690 | 149 (1.630) | 7 (0.080) | 7/582 | 10.9 | 5.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 113 (1.270) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 2087218 = | 92 (1.010) | 4 (0.040) | 4/584 | 12.9 | 4.4% | intergenic (‑104/+111) | yoeI/yeeY | uncharacterized protein/LysR family putative transcriptional regulator |
| ? | NC_000913 | 2087243 = | 84 (0.940) | intergenic (‑129/+86) | yoeI/yeeY | uncharacterized protein/LysR family putative transcriptional regulator | |||||
| * | ? | NC_000913 | 294244 = | 123 (1.340) | 4 (0.040) | 4/586 | 12.9 | 3.2% | coding (556/855 nt) | yagM | CP4‑6 prophage; uncharacterized protein |
| ? | NC_000913 | 294263 = | 121 (1.350) | coding (537/855 nt) | yagM | CP4‑6 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 1475091 = | 76 (0.830) | 3 (0.030) | 3/580 | 13.6 | 3.8% | intergenic (+10/‑53) | ydbC/ydbD | putative NAD(P)‑binding oxidoreductase/PF10971 family putative periplasmic methylglyoxal resistance protein |
| ? | NC_000913 | 1475117 = | 77 (0.870) | intergenic (+36/‑27) | ydbC/ydbD | putative NAD(P)‑binding oxidoreductase/PF10971 family putative periplasmic methylglyoxal resistance protein | |||||
| * | ? | NC_000913 | = 2848751 | 79 (0.860) | 3 (0.030) | 3/586 | 13.7 | 3.5% | coding (491/1827 nt) | hycC | hydrogenase 3, membrane subunit |
| ? | NC_000913 | = 2848865 | 89 (1.000) | coding (377/1827 nt) | hycC | hydrogenase 3, membrane subunit | |||||
| * | ? | NC_000913 | 2164954 = | 102 (1.120) | 3 (0.030) | 3/584 | 13.7 | 2.9% | coding (679/723 nt) | baeR | response regulator in two‑component regulatory system with BaeS |
| ? | NC_000913 | 2164984 = | NA (NA) | coding (709/723 nt) | baeR | response regulator in two‑component regulatory system with BaeS | |||||
| * | ? | NC_000913 | 2078290 = | 103 (1.130) | 3 (0.030) | 3/584 | 13.7 | 3.0% | intergenic (+183/+259) | yeeW/yoeD | CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913 | 2078315 = | 95 (1.070) | intergenic (+208/+234) | yeeW/yoeD | CP4‑44 prophage; uncharacterized protein;Phage or Prophage Related/pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related | |||||