mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 30.4% | 138.1 / 62.2 | 102 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 21.1% | 104.3 / 52.8 | 96 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 20.6% | 107.1 / 46.4 | 96 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 13 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 253 (1.150) | 12 (0.060) | 10/546 | 27.5 | 4.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 238 (1.110) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 251 (1.140) | 9 (0.040) | 9/546 | 28.3 | 3.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 237 (1.110) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 3304484 | NA (NA) | 8 (0.040) | 8/542 | 28.9 | NA | intergenic (+29/+89) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity |
| ? | NC_000913 | = 3304553 | NA (NA) | intergenic (+98/+20) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity | |||||
| * | ? | NC_000913 | = 4076176 | 240 (1.090) | 9 (0.040) | 8/548 | 29.1 | 3.7% | coding (31/873 nt) | yihY | BrkB family putative transporter, inner membrane protein |
| ? | NC_000913 | = 4076196 | 230 (1.070) | coding (51/873 nt) | yihY | BrkB family putative transporter, inner membrane protein | |||||
| * | ? | NC_000913 | 4335640 = | 230 (1.040) | 7 (0.030) | 7/536 | 29.5 | 3.1% | intergenic (‑50/+54) | eptA/adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| ? | NC_000913 | 4335670 = | 216 (1.030) | intergenic (‑80/+24) | eptA/adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter | |||||
| * | ? | NC_000913 | = 1068490 | NA (NA) | 6 (0.030) | 6/548 | 30.8 | NA | intergenic (+236/+21) | ymdF/rutG | KGG family protein/pyrimidine permease |
| ? | NC_000913 | = 1068495 | NA (NA) | intergenic (+241/+16) | ymdF/rutG | KGG family protein/pyrimidine permease | |||||
| * | ? | NC_000913 | 639508 = | 220 (1.000) | 6 (0.030) | 6/550 | 30.9 | 2.6% | coding (564/564 nt) | ahpC | alkyl hydroperoxide reductase, C22 subunit |
| ? | NC_000913 | 639635 = | 239 (1.110) | intergenic (+127/‑118) | ahpC/ahpF | alkyl hydroperoxide reductase, C22 subunit/alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding | |||||
| * | ? | NC_000913 | 3826376 = | 186 (0.840) | 5 (0.020) | 5/544 | 31.6 | 2.6% | coding (1167/2082 nt) | recG | ATP‑dependent DNA helicase |
| ? | NC_000913 | 3826574 = | 193 (0.910) | coding (1365/2082 nt) | recG | ATP‑dependent DNA helicase | |||||
| * | ? | NC_000913 | = 4583124 | 237 (1.070) | 5 (0.020) | 5/550 | 31.8 | 2.2% | intergenic (‑76/+125) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583237 | 215 (1.000) | intergenic (‑189/+12) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | 2819836 = | 245 (1.110) | 4 (0.020) | 4/544 | 32.6 | 1.7% | coding (2176/2631 nt) | alaS | alanyl‑tRNA synthetase |
| ? | NC_000913 | 2819907 = | 231 (1.080) | coding (2105/2631 nt) | alaS | alanyl‑tRNA synthetase | |||||