mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 35.0% | 67.4 / 48.5 | 63 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 30.4% | 48.8 / 38.7 | 60 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 27.6% | 49.0 / 40.5 | 60 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,875,521 | 0 | T | C | 25.8% | 89.7 / 16.0 | 63 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| * | NC_000913 | 4,296,286 | 0 | C | T | 23.8% | 113.8 / 29.5 | 63 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 74 (0.990) | 30 (0.550) | 10/440 | 4.7 | 35.9% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 53 (0.970) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1207805 | 65 (0.870) | 9 (0.130) | 9/568 | 6.5 | 14.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 47 (0.660) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4542690 | 162 (2.170) | 9 (0.120) | 9/582 | 6.6 | 6.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 107 (1.470) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1502317 = | 80 (1.070) | 4 (0.060) | 4/580 | 9.0 | 4.8% | intergenic (+162/‑140) | tehB/ydcL | tellurite, selenium methyltransferase, SAM‑dependent; tellurite, selenium resistance protein/lipoprotein |
| ? | NC_000913 | 1502359 = | 83 (1.150) | intergenic (+204/‑98) | tehB/ydcL | tellurite, selenium methyltransferase, SAM‑dependent; tellurite, selenium resistance protein/lipoprotein | |||||
| * | ? | NC_000913 | 2987087 = | 134 (1.790) | 4 (0.050) | 4/598 | 9.2 | 2.9% | intergenic (+11/‑449) | yqeG/yqeH | putative transporter/putative LuxR family transcriptional regulator |
| ? | NC_000913 | 2987122 = | 136 (1.820) | intergenic (+46/‑414) | yqeG/yqeH | putative transporter/putative LuxR family transcriptional regulator | |||||
| * | ? | NC_000913 | 4609258 = | 57 (0.760) | 3 (0.040) | 3/578 | 9.6 | 5.3% | coding (613/678 nt) | yjjG | dUMP phosphatase |
| ? | NC_000913 | 4609392 = | 53 (0.740) | intergenic (+69/‑22) | yjjG/prfC | dUMP phosphatase/peptide chain release factor RF‑3 | |||||
| * | ? | NC_000913 | = 523934 | 52 (0.700) | 3 (0.040) | 3/580 | 9.6 | 5.4% | coding (674/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 523973 = | 54 (0.750) | coding (713/4281 nt) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3720967 = | 73 (0.980) | 3 (0.040) | 3/596 | 9.8 | 4.1% | noncoding (335/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | 4244025 = | 67 (0.900) | coding (1051/1545 nt) | malF | maltose transporter subunit | |||||
| * | ? | NC_000913 | = 2662386 | 92 (1.230) | 3 (0.040) | 3/596 | 9.8 | 3.2% | noncoding (78/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 2662390 = | 91 (1.220) | noncoding (82/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 1991553 = | 90 (1.200) | 3 (0.040) | 3/598 | 9.8 | 3.2% | coding (67/666 nt) | yecA | UPF0149 family protein |
| ? | NC_000913 | 2729947 = | NA (NA) | noncoding (1211/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||