Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC JC	NC_000913	572,356	IS2 (–) +5 bp	54.1%	intergenic (+105/‑8)	ybcM → / → ylcH	DLP12 prophage; putative DNA‑binding transcriptional regulator/uncharacterized protein, DLP12 prophage

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	381260 =	NA (NA)	17 (0.370)	15/548	NT	49.5%	noncoding (1/1331 nt)	IS2	repeat region
	?	NC_000913	572356 =	17 (0.380)					intergenic (+105/‑12)	ybcM/ylcH	DLP12 prophage; putative DNA‑binding transcriptional regulator/uncharacterized protein, DLP12 prophage
*	?	NC_000913	= 382590	NA (NA)	23 (0.510)	21/550	NT	57.0%	noncoding (1331/1331 nt)	IS2	repeat region
	?	NC_000913	= 572360	17 (0.380)					intergenic (+109/‑8)	ybcM/ylcH	DLP12 prophage; putative DNA‑binding transcriptional regulator/uncharacterized protein, DLP12 prophage

ACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTCGCGCTGAGGTTCGCGTCCAGTAAAAAAGGCAATAAGTCCATAAATAATCC  >  NC_000913/382297‑382881                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                    acGCCAGTGCGGCCGGATGTGGGGACTGGAACCGAAGAACACGGCGGGGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGGGAAAACGATAAAGCGTGACTACATCAGTAGCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGGGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCt                                                                                                                                                                                                                                                                                              <  2:325887/301‑1 (MQ=9)        ttCGACCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGc                                                                                                                                                                                                                                                                                       <  1:414958/301‑1 (MQ=18)                                       aaccgggtgggaggAGGCCGGAGAGGAACGGAATAGGAGAGAGCTGCGTGAAAACGAGAAAGCGTGACTAAAGCAGGATCATGCCCAAACCAGACGGGTGAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAAt                                                                                                                                                                                                                                                        <  1:406116/289‑1 (MQ=14)                                          cggcggTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTCACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGCAATATAGGTGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATaa                                                                                                                                                                                                                                                      >  2:319408/1‑300 (MQ=255)                                           ggcggTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAAc                                                                                                                                                                                                                                                     <  2:383637/300‑1 (MQ=255)                                                            ggagGAAAGGAAGAGCAGGAAGCTTACAGAAAACGAGAAAGCGTGACTACATCAGTATCAAGCCCAAAACAGACAGGTTAACGGCAGCAAAGAGCCTTGCAGAGGCGTTCGAGCAGTATAACGAATGGCATCCCCAGAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATAc                                                                                                                                                                                                                                    <  1:145571/299‑1 (MQ=17)                                                                tAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAACGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTTGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAATAAATGTCTGGACATGTAGTGGCAAATGCAATTACCGATCAGGAGATTTTCGCCAATCACTACCGGCGCATGAATACCGTCACCATgcatactccgcgt                                                                                                                                                                                                                                >  2:398202/1‑288 (MQ=14)                                                                tAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGACTCCGAATAATGAGCTGGGTTCTCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGCTGTATGGAAATATAGGGGCAAATCCAATTACCTATAAGGCAGTTTGCGCACAGAAATACCGGACACTGAATAACGGAACCATGACACATCCGGGTa                                                                                                                                                                                                                               >  2:77761/1‑301 (MQ=14)                                                                                 ttgtCGTGTAAACGAGAAAGAGTGACTACATCATGATCATTACCAAACCAGACGTGTGTACTGCAGCAAATAACATTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATATTGAGCTGGGTTATCGCTCGCCACGGGAAGATCCGCGGCAGCGGGCTTGTAAAGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATaacaac                                                                                                                                                                                                              <  2:49584/298‑1 (MQ=18)                                                                                                             cATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCGATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCGTGACCAATACGGGTATTTGCGCCGATAACAACTTCACCTGCAGTTTAATCAATAGTTAc                                                                                                                                                                                   >  2:292302/1‑300 (MQ=255)                                                                                                                  gTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATAGAGGGCAAAATCCATTTACCTATAAGGCAGTTTGCGCCAATCACTACCGGCCCCTGAATAACGGAACCAGGAAAAATCAGGTTATTCGCCGCCATACCAACCTACCCTGCatgtctcaaaataatcaccctgtg                                                                                                                                                                             >  1:332548/1‑278 (MQ=17)                                                                                                                  gTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATAGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTTCGACAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACCACTTCACCTGCAGGTTCATCAATGATTACCTggg                                                                                                                                                                              >  2:55410/1‑299 (MQ=255)                                                                                                                        tGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATATGCGGCAACGGGCTTGTACTGGGTTAAGTGATAACAGATGTCTGGAACTATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGTACCGTGAATAACGGCACCATGACACATAAGGGTATTCGCGCCGATACCAACTTCACCGTCCGTTTACGACATAATTACATGGTATGCAAt                                                                                                                                                                       >  2:57567/1‑301 (MQ=18)                                                                                                                          cccAAACCAGACGGGTGAAGGGCAGCAAAGAGCCGTGCAGAGCCGTTCGAGCATTATAACGAATGGCATCCGCATAGGGCGCTGGGTTATCGCTCGCCACGGGAATATCTTCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGTGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCTCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATc                                                                                                                                                                      <  2:346613/300‑1 (MQ=255)                                                                                                                                  aGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTAc                                                                                                                                                                                                                                                                    <  1:179133/198‑1 (MQ=255)                                                                                                                                                    aaaaaaacgtGCAGAGGCTTGCGAGCATTATAACGAATGGCATCCGTATAGGGCGCTGGGTTATCGCTCGCCACGGGAATAGCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTAGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCGGAATAACGGAACCATGACAAATACGGGTATTAGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGc                                                                                                                                           <  1:398193/292‑1 (MQ=37)                                                                                                                                                         acattGCGGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCCCGCCACGGGAATATCTGCGGCAGCGGGCTGGTAATTGGGTAAGTGATAACAGATGTCTGGAAATATAGGGGCCAATCAAATTACCTATCAGGAAGTTTGCGCCAATCACTACGGGACCCGGAATACCGGTCCCAGGACAAATCCGGGTCTTGGCGCGGATAACAAATTCAACTCCACATTACTCATGATTTCCCTGTTCGACAATCTTCATCTTTTTCTCTTTAATATTacgattata                                                                                                                                      >  1:249984/4‑293 (MQ=12)                                                                                                                                                           cTTGCAGAGGCGGTCAAGCATTATAACGAAGTGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGAt                                                                                                                                    <  2:226318/301‑1 (MQ=255)                                                                                                                                                            ttGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACCAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGACTATTTTTCTCTTTACCATTAAGCTTCTGATa                                                                                                                                   >  1:322220/1‑301 (MQ=255)                                                                                                                                                                             cATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCACTCTTAATATTTTTCCCTTTAACCTTAAGCTTCCGCTAGTTTTTCAGTTCCtgtg                                                                                                                  >  2:223367/1‑301 (MQ=255)                                                                                                                                                                                       aaTGGGATCCGAAGAGGGCGCTGGGGTATCGATCGCCACGGGAATATCGTCGGCAGCGGGCTTGGAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGt                                                                                                         <  1:77761/300‑1 (MQ=255)                                                                                                                                                                                                cGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGAGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCAAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGACTAACAACACCATGACACATAAGGGTCTTCGAGCAGACAACCACTTCCACTCCAGTTTCAACACTACTTCCCTGCTATTCAATCAGAATCTTCTTCTCCTTAACATTCAGCTTCAGTTAGTTTTTCTGtctctattaccaaatgtttggcagaca                                                                                               >  1:387230/1‑275 (MQ=18)                                                                                                                                                                                                            agaaagaTCGATGGCCACGGGAATAGCTGCGGAAGAGGGCTTGTAATGGGGTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCAACATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCt                                                                                    <  1:287283/294‑1 (MQ=255)                                                                                                                                                                                                                  aTCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCGATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATACCTGCACCATGCCAAATACGGGTATTCTCGCCGATACAAACTTCCCCTTCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTATTTACCCTTAAGCTTCAGATCGGTTTTCAGTTCCTCTCACATAAGGTTGTGAATAAGCGGTTGACGCtctgtctt                                                                             >  2:287289/1‑294 (MQ=37)                                                                                                                                                                                                                   tcgctcgcCAAGGGAAGATCGGCGGTATCGGGCTTGTAATGGGTTAAGTGATAACAGATGTATGGAAATATAGGGGCAAAGCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAg                                                                            <  1:18890/301‑1 (MQ=255)                                                                                                                                                                                                                                                 ggCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAATGTTGGGAATAAGCGGTTGACTCTTCCACCAGTTCGGAATAGCGGGTGGGTTTTTcgcg                                                 >  1:386185/1‑298 (MQ=255)                                                                                                                                                                                                                                                   cTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGCATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTGCAGTTCCTGTGACAGAAGGTTGGGAATCAGCGGTTGACGCTTCCACCAGTGCGTAATAGCGGGTGGGTTTGTCGCTCTGAg                                            >  2:316807/1‑301 (MQ=255)                                                                                                                                                                                                                                                      gTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACCTTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGCCGCTTCCACCATTGCGGAATAGCGGGTGGGTTTGTCGCGCTGAGGtt                                         >  2:378442/1‑301 (MQ=255)                                                                                                                                                                                                                                                                     aTAACAGATGTCTTGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACGACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTCGCGCTGAGGTTCGCGTCCAGTaaaaa                          <  1:55410/301‑1 (MQ=255)                                                                                                                                                                                                                                                                         cAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCaataa                                                                                                                                                                                       <  2:318430/140‑1 (MQ=255)                                                                                                                                                                                                                                                                         cAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCaataa                                                                                                                                                                                       >  1:318422/1‑140 (MQ=255)                                                                                                                                                                                                                                                                         aaGATGTCTGGAAATAAAGGGGCAAATCCAATGACCTAGCATGCAGTATGCGCCCACAACTACCGGACCCAGAATAACGGCACCATGAAAAATACGGGTATTCGCGCCGATAACAACTTTACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCGTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTCGCGCTGAGGTTCGCGTCCAGTAAAAAAGGc                      <  1:428720/300‑1 (MQ=255)                                                                                                                                                                                                                                                                            aggTCTGGAAAAATAGGGGCAAAACCAATTACCTAGCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTCGCGCTGAGGTTCGCGTCCAGTAAAAAAgg                       <  1:316799/295‑1 (MQ=255)                                                                                                                                                                                                                                                                              gTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTCGCGGTGAGGTTCGCGTCCAGTAAAAAAGGCAATaa                 >  1:238776/1‑301 (MQ=255)                                                                                                                                                                                                                                                                                      atatAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATTACAACTACGGGTATTCGCGCCGATCACAACTTCACCTGCAGTTTCATCAATACTTACCTGGTCTGCACTCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATTGTTTTTTAGTTCCTGTGACAGAAGGTTTGGAATAAGCg                                                                                             >  2:118967/1‑217 (MQ=255)                                                                                                                                                                                                                                                                                      atatAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCg                                                                                             <  1:118967/217‑1 (MQ=255)                                                                                                                                                                                                                                                                                       aatagtcgCAAAACCAATGACCCATCAGGCAGTTTGCGCCAATCACTCCCGGCCCCTGAATAACGTCACCATTACGAATACGGGTATTCTCGCCGATAACAACTTAACCTGCAATTTCATCAATTATTACCTGGTCTGAAATCGGAATATTTTTCGCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCGGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTCGCGCTGAGGTTCGCGTCCAGTAAAAAAGGCAATAAGTCCataaa        <  2:332556/294‑1 (MQ=255)                                                                                                                                                                                                                                                                                              ccAAATACAAATACCTCTCAGGCAGTTTTCGCCAAGCACTACCGTACCCTGAATAAAGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAAGTACCTTGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTCGCGCTGAGGTTCGCGTCCAGTAAAAAAGGCAATAAGTCCATAAATAATcc  <  1:292296/299‑1 (MQ=255)                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                    ACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTCCACCAGTGCGGAATAGCGGGTGGGTTTGTCGCGCTGAGGTTCGCGTCCAGTAAAAAAGGCAATAAGTCCATAAATAATCC  >  NC_000913/382297‑382881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.