mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 36,378 | C→T | L58L (TTG→TTA) | tpn ← | IS431mec transposase |
| RA | 1,416,458 | A→T | I216N (ATT→AAT) | oppD ← | oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein |
| RA | 1,513,930 | A→T | L413F (TTA→TTT) | USA300HOU_1379 → | hypothetical membrane protein |
| RA | 1,646,189 | G→C | A155G (GCA→GGA) | pepP ← | M24B family Xaa‑Pro dipeptidase |
| RA | 2,010,363 | C→T | C146Y (TGT→TAT) | ygaD ← | ABC superfamily ATP binding cassette transporter, membrane protein |
| RA | 2,018,810 | (T)7→6 | coding (109/810 nt) | mgt ← | transglycosylase |
| MC JC | 2,144,161 | 4 bp→10 bp | coding (480‑483/1254 nt) | sdrH ← | Ser‑Asp rich fibrinogen/bone sialoprotein bindin protein SdrH |
| RA | 2,144,182 | T→C | P154P (CCA→CCG) | sdrH ← | Ser‑Asp rich fibrinogen/bone sialoprotein bindin protein SdrH |
| RA | 2,279,705 | G→A | intergenic (+1373/+6659) | mtlD → / ← glmM | mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase |
| RA | 2,372,946 | G→T | A277D (GCT→GAT) | pbuG ← | NCS2 family nucleobase:cation symporter‑2 |
| RA | 2,522,286 | A→G | P782P (CCT→CCC) | nirB ← | nitrite reductase (NAD(P)H) large subunit |
| RA | 2,532,298 | A→T | T15T (ACA→ACT) | murN → | FemAB family peptidoglycan biosynthesis protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP000730 | 2176667–2181188 | 2181188 | 1–4522 | 14 [11] | [11] 12 | [rrl4]–[rrs4] | [rrl4],[rrs4] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 512620 = | 31 (0.910) | 30 (1.250) +40 bp |
26/190 | 0.1 | 58.0% | intergenic (+688/‑173) | recR/rrs1 | recombination protein RecR/16S ribosomal RNA |
| ? | CP000730 | 1998278 = | NA (NA) | intergenic (‑6/+5) | USA300HOU_t0050/rrf4 | tRNA‑Val/5S ribosomal RNA | |||||