New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1555341	51 (0.930)	3 (0.060)	3/234	NT	6.1%	intergenic (+37/+69)	fer/ribU	ferredoxin/hypothetical membrane protein
	?	CP000730	= 1555365	45 (0.890)					intergenic (+61/+45)	fer/ribU	ferredoxin/hypothetical membrane protein

TGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCTTTAATAATATTGAATGGTATAATTCC  >  CP000730/1555226‑1555505                                                                                                                                            |                                                                                                                                             tGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAc                                                                                                                                             >  1:411722‑M2/1‑140 (MQ=255)     aTTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgc                                                                                                                                         <  2:197050‑M2/141‑6 (MQ=255)           ggatgCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTtta                                                                                                                                   <  1:269406/141‑1 (MQ=255)            gatgCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttat                                                                                                                                  <  2:595799/141‑1 (MQ=255)             atgCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttatt                                                                                                                                 >  2:502515/1‑141 (MQ=255)                       gATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGta                                                                                                                       >  1:211600/1‑141 (MQ=255)                          tCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTatat                                                                                                                    <  1:287406/141‑1 (MQ=255)                             aTTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTAtattat                                                                                                                 >  2:187391/1‑141 (MQ=255)                               tAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTAttt                                                                                                               >  1:686145/1‑141 (MQ=255)                               tAAAATTGCAGACGAATCATATGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATTGTCTATAGAAAAATCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTAttt                                                                                                               >  1:242766/1‑141 (MQ=255)                                   aTTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTACt                                                                                                           >  2:610274/1‑141 (MQ=255)                                        aGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgctt                                                                                                                                       <  2:410320‑M2/108‑8 (MQ=255)                                        aGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgctt                                                                                                                                       >  1:410320‑M2/1‑101 (MQ=255)                                        aGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAAt                                                                                                      >  2:685463/1‑141 (MQ=255)                                        aGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAAt                                                                                                      >  1:573076/1‑141 (MQ=255)                                          aCGAATGATTTGAGGGGGTCGCTTTAAAATCTGAATAATTGATTTTTTAGACGAATGTTCTATTGTAAAAGCAGACAAGCTATCGATTATTAATTTTCACCTCCTTTTTATTATTATGTGTTTATTATTTTACTTTTAttt                                                                                                    >  2:515894/1‑141 (MQ=255)                                            gAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGa                                                                                                  >  2:205813/1‑141 (MQ=255)                                             aataatTTCATGGGGACTCTTTAAAATTTGAATAATTGATTTTTTAGTCAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGAt                                                                                                 <  2:569564/141‑1 (MQ=255)                                                cATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTaa                                                                                              >  1:52394/1‑141 (MQ=255)                                                         gggACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTc                                                                                     <  1:18540/141‑1 (MQ=255)                                                          ggACGCTTTAAAATTGGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAATTTCttgaaa                                                                                    <  1:550866/141‑5 (MQ=255)                                                            aCGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAg                                                                                  <  1:498667/141‑1 (MQ=255)                                                                    aaaTTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGc                                                                          <  1:414820/141‑1 (MQ=255)                                                                       tttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAg                                                                       <  2:90635/141‑1 (MQ=255)                                                                       tttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAg                                                                       <  1:502515/141‑1 (MQ=255)                                                                        ttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGc                                                                      <  1:142730/141‑1 (MQ=255)                                                                         tGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGcc                                                                     <  2:145819/141‑1 (MQ=255)                                                                                ttGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtata                                                              <  2:700978/141‑1 (MQ=255)                                                                                    ttttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGt                                                          <  1:150506/141‑1 (MQ=255)                                                                                    ttttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGt                                                          <  1:150412/141‑1 (MQ=255)                                                                                     tttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTa                                                         >  1:345897/1‑141 (MQ=255)                                                                                     tttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTa                                                         <  1:120161/141‑1 (MQ=255)                                                                                         tAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTAGATTATGGTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCGTCTATATAGTAaaat                                                     >  1:530229/1‑141 (MQ=255)                                                                                         tAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTAAATTTGATTGCTTTAATTTGGTTAAATTCTTTTCAAGATATTCGCAAGCCTTCTATATAGTaaaaa                                                     >  1:530298/1‑140 (MQ=255)                                                                                          aGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAaaata                                                    <  1:284862/141‑1 (MQ=255)                                                                                            aCAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGa                                                                                 <  1:524058/110‑1 (MQ=255)                                                                                            aCAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGa                                                                                 >  2:524058/1‑110 (MQ=255)                                                                                             cAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAaaataaat                                                 >  2:282979/1‑141 (MQ=255)                                                                                                aTGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACa                                              <  2:211600/141‑1 (MQ=255)                                                                                                       ataGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGaaa                                       >  1:113652/1‑141 (MQ=255)                                                                                                       ataGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGaaa                                       >  1:358971/1‑141 (MQ=255)                                                                                                          gAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgctttttctatagaacatttgtctaaaaaatcaattattcaaattttaaagcgtccccatcaaatgattcgtctgcaattttaatagaatctgtagggcatcc                                    <  2:596071‑M2/141‑107 (MQ=255)                                                                                                             aaaGCAGGCAAGCTATCGTTTATTGATAGTCAcctgctttttctatagaacatttgtctaaaaaatcaattattcaaattttaaagcgtccccatcaaatgattcgtctgcaattttaatagaatctgtagggcatccatc                                 <  1:36608‑M2/141‑110 (MQ=255)                                                                                                               aGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATa                               >  1:445869/1‑141 (MQ=255)                                                                                                                gCAGGCCAGCTAGCGTTTATTGCTAGTCACCTGCTTTTTATTATTATGGGTATAGTATTTTGCTTTCATTTGATTTATTTTTTTTAAAGAAATTCGCAAGCCTTCTATATAGTACAATAAAAACAATAGAAAGAACAATAc                              >  2:503488/1‑141 (MQ=255)                                                                                                                gCAGGCAAGCTATCGTTTATTGATAGTCAcctgctttttctatagaacatttgtctaaaaaatcaattattcaaattttaaagcgtccccatcaaatgattcgtctgcaattttaatagaatctgtagggcatccatcaat                              >  2:36608‑M2/1‑29 (MQ=255)                                                                                                                 cAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATAcc                             >  1:153021/1‑141 (MQ=255)                                                                                                                   ggCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCtt                           >  1:426368/1‑141 (MQ=255)                                                                                                                   ggCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCtt                           <  1:197050/141‑1 (MQ=255)                                                                                                                    gCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCttt                          >  1:21408/1‑141 (MQ=255)                                                                                                                    gCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCttt                          >  1:146541/1‑141 (MQ=255)                                                                                                                             cGTGTATTCATAGTCACCTGCTTTTTAGTAGTATGGGGATATTATTTTGCTTTAATTCTATTAAATTCTTTTCAAGAAATTCGCAAGCCATCGATATAGTAAAACATATACCATAGAAATAACGATACCTGTAATAAtttt                 >  2:341032/1‑141 (MQ=255)                                                                                                                               tttATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCTTTAATAATATTGa               >  1:20334/1‑141 (MQ=255)                                                                                                                                ttATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCTTTAATAATATTGaa              >  2:649190/1‑141 (MQ=255)                                                                                                                                      aTAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCTTTAATAATATTGAATGGtat        <  1:477061/141‑1 (MQ=255)                                                                                                                                            aCCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCTTTAATAATATTGAATGGTATAATTcc  <  2:37426/141‑1 (MQ=255)                                                                                                                                            aCCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCTTTAATAATATTGAATGGTATAATTcc  <  2:164541/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                             TGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCTTTAATAATATTGAATGGTATAATTCC  >  CP000730/1555226‑1555505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.