New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1555341	51 (0.930)	3 (0.060)	3/234	NT	6.1%	intergenic (+37/+69)	fer/ribU	ferredoxin/hypothetical membrane protein
	?	CP000730	= 1555365	45 (0.890)					intergenic (+61/+45)	fer/ribU	ferredoxin/hypothetical membrane protein

ATATGAAGATATGGAAGATGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCTTT  >  CP000730/1555208‑1555481                                                                                                                                      |                                                                                                                                             atatGAAGATATGGAAGATGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTa                                                                                                                                       <  1:271123/141‑1 (MQ=255)  tatGAAGATATGGAAGATGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTAt                                                                                                                                      <  2:468124/141‑1 (MQ=255)     gAAGATATGGAAGATGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGt                                                                                                                                   >  2:105669/1‑141 (MQ=255)     gAAGATATGGAAGATGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAAGTATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGt                                                                                                                                   <  1:695548/141‑1 (MQ=255)       aGATATGGAAGATGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGttt                                                                                                                                 <  1:341320/141‑1 (MQ=255)              gAAGATGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATa                                                                                                                          <  1:393690/141‑1 (MQ=255)              gAAGATGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATa                                                                                                                          >  2:701131/1‑141 (MQ=255)              gAAGATGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATa                                                                                                                          >  1:3955/1‑141 (MQ=255)              gAAGATGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTAACGTTTATTGATa                                                                                                                          >  2:571373/1‑141 (MQ=255)                 gATGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTc                                                                                                                       >  2:477061/1‑141 (MQ=255)                 gATGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTc                                                                                                                       <  2:605682/141‑1 (MQ=255)                   tGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAc                                                                                                                     >  1:411722‑M2/1‑140 (MQ=255)                       aTTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGtgactatcaataaacgatagcttgcctgc                                                                                                                 >  2:36608‑M1/1‑112 (MQ=255)                       aTTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgc                                                                                                                 <  2:197050‑M2/141‑6 (MQ=255)                          gatggatgCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGtgactatcaataaacgatagcttgcctgcttt                                                                                                              <  1:36608‑M1/141‑33 (MQ=255)                             ggatgCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGtgactatcaataaacgatagcttgcctgctttttc                                                                                                           <  2:596071‑M1/141‑36 (MQ=255)                             ggatgCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTtta                                                                                                           <  1:269406/141‑1 (MQ=255)                              gatgCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttat                                                                                                          <  2:595799/141‑1 (MQ=255)                               atgCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttatt                                                                                                         >  2:502515/1‑141 (MQ=255)                                       cAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCg                                                                                                                                    >  1:162668/1‑106 (MQ=255)                                       cAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCg                                                                                                                                    <  2:162668/106‑1 (MQ=255)                                         gATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGta                                                                                               >  1:211600/1‑141 (MQ=255)                                            tCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTatat                                                                                            <  1:287406/141‑1 (MQ=255)                                               aTTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTAtattat                                                                                         >  2:187391/1‑141 (MQ=255)                                                 tAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTAttt                                                                                       >  1:686145/1‑141 (MQ=255)                                                 tAAAATTGCAGACGAATCATATGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATTGTCTATAGAAAAATCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTAttt                                                                                       >  1:242766/1‑141 (MQ=255)                                                     aTTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTACt                                                                                   >  2:610274/1‑141 (MQ=255)                                                          aGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgctt                                                                                                               >  1:410320‑M2/1‑101 (MQ=255)                                                          aGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgctt                                                                                                               <  2:410320‑M2/108‑8 (MQ=255)                                                          aGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAAt                                                                              >  1:573076/1‑141 (MQ=255)                                                          aGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAAt                                                                              >  2:685463/1‑141 (MQ=255)                                                            aCGAATGATTTGAGGGGGTCGCTTTAAAATCTGAATAATTGATTTTTTAGACGAATGTTCTATTGTAAAAGCAGACAAGCTATCGATTATTAATTTTCACCTCCTTTTTATTATTATGTGTTTATTATTTTACTTTTAttt                                                                            >  2:515894/1‑141 (MQ=255)                                                              gAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGa                                                                          >  2:205813/1‑141 (MQ=255)                                                               aataatTTCATGGGGACTCTTTAAAATTTGAATAATTGATTTTTTAGTCAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGAt                                                                         <  2:569564/141‑1 (MQ=255)                                                                  cATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTaa                                                                      >  1:52394/1‑141 (MQ=255)                                                                           gggACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTc                                                             <  1:18540/141‑1 (MQ=255)                                                                            ggACGCTTTAAAATTGGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAATTTCttgaaa                                                            <  1:550866/141‑5 (MQ=255)                                                                              aCGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAg                                                          <  1:498667/141‑1 (MQ=255)                                                                                      aaaTTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGc                                                  <  1:414820/141‑1 (MQ=255)                                                                                         tttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAg                                               <  2:90635/141‑1 (MQ=255)                                                                                         tttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAg                                               <  1:502515/141‑1 (MQ=255)                                                                                          ttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGc                                              <  1:142730/141‑1 (MQ=255)                                                                                           tGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGcc                                             <  2:145819/141‑1 (MQ=255)                                                                                                  ttGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtata                                      <  2:700978/141‑1 (MQ=255)                                                                                                      ttttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGt                                  <  1:150506/141‑1 (MQ=255)                                                                                                      ttttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGt                                  <  1:150412/141‑1 (MQ=255)                                                                                                       tttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTa                                 >  1:345897/1‑141 (MQ=255)                                                                                                       tttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTa                                 <  1:120161/141‑1 (MQ=255)                                                                                                           tAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTAGATTATGGTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCGTCTATATAGTAaaat                             >  1:530229/1‑141 (MQ=255)                                                                                                           tAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTAAATTTGATTGCTTTAATTTGGTTAAATTCTTTTCAAGATATTCGCAAGCCTTCTATATAGTaaaaa                             >  1:530298/1‑140 (MQ=255)                                                                                                            aGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAaaata                            <  1:284862/141‑1 (MQ=255)                                                                                                              aCAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGa                                                         >  2:524058/1‑110 (MQ=255)                                                                                                              aCAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGa                                                         <  1:524058/110‑1 (MQ=255)                                                                                                               cAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAaaataaat                         >  2:282979/1‑141 (MQ=255)                                                                                                                  aTGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACa                      <  2:211600/141‑1 (MQ=255)                                                                                                                         ataGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGaaa               >  1:113652/1‑141 (MQ=255)                                                                                                                         ataGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGaaa               >  1:358971/1‑141 (MQ=255)                                                                                                                            gAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgctttttctatagaacatttgtctaaaaaatcaattattcaaattttaaagcgtccccatcaaatgattcgtctgcaattttaatagaatctgtagggcatcc            <  2:596071‑M2/141‑107 (MQ=255)                                                                                                                               aaaGCAGGCAAGCTATCGTTTATTGATAGTCAcctgctttttctatagaacatttgtctaaaaaatcaattattcaaattttaaagcgtccccatcaaatgattcgtctgcaattttaatagaatctgtagggcatccatc         <  1:36608‑M2/141‑110 (MQ=255)                                                                                                                                aaGCAGGtgactatcaataaacgatagcttgcctgctttttctatagaacatttgtctaaaaaatcaattattcaaattttaaagcgtccccatcaaatgattcgtct                                         >  1:410320‑M1/1‑7 (MQ=255)                                                                                                                                aaGCAGGtgactatcaataaacgatagcttgcctgctttttctatagaacatttgtctaaaaaatcaattattcaaattttaaagcgtccccatcaaatgattcgtct                                         <  2:410320‑M1/108‑102 (MQ=255)                                                                                                                                 aGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATa       >  1:445869/1‑141 (MQ=255)                                                                                                                                  gCAGGtgactatcaataaacgatagcttgcctgctttttctatagaacatttgtctaaaaaatcaattattcaaattttaaagcgtccccatcaaatgattcgtctgcaattttaatagaatctgtagggcatccatcaat      <  2:197050‑M1/141‑137 (MQ=255)                                                                                                                                  gCAGGCCAGCTAGCGTTTATTGCTAGTCACCTGCTTTTTATTATTATGGGTATAGTATTTTGCTTTCATTTGATTTATTTTTTTTAAAGAAATTCGCAAGCCTTCTATATAGTACAATAAAAACAATAGAAAGAACAATAc      >  2:503488/1‑141 (MQ=255)                                                                                                                                  gCAGGCAAGCTATCGTTTATTGATAGTCAcctgctttttctatagaacatttgtctaaaaaatcaattattcaaattttaaagcgtccccatcaaatgattcgtctgcaattttaatagaatctgtagggcatccatcaat      >  2:36608‑M2/1‑29 (MQ=255)                                                                                                                                   cAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATAcc     >  1:153021/1‑141 (MQ=255)                                                                                                                                     ggCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCtt   >  1:426368/1‑141 (MQ=255)                                                                                                                                     ggCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCtt   <  1:197050/141‑1 (MQ=255)                                                                                                                                      gtgactatcaataaacgatagcttgcctgctttttctatagaacatttgtctaaaaaatcaattattcaaattttaaagcgtccccatcaaatgattcgtctgcaattttaatagaatctgtagggcatccatcaattgca  >  1:411722‑M1/1‑1 (MQ=255)                                                                                                                                      gCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCttt  >  1:146541/1‑141 (MQ=255)                                                                                                                                      gCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCttt  >  1:21408/1‑141 (MQ=255)                                                                                                                                      |                                                                                                                                             ATATGAAGATATGGAAGATGCAATTGATGGATGCCCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGAAATAACGATACCTTT  >  CP000730/1555208‑1555481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.