New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 547170	33 (0.600)	4 (0.080)	4/238	NT	11.6%	intergenic (+70/‑187)	hpt/ftsH	hypoxanthine phosphoribosyltransferase/cell division protein FtsH
	?	CP000730	= 547176	30 (0.580)					intergenic (+76/‑181)	hpt/ftsH	hypoxanthine phosphoribosyltransferase/cell division protein FtsH

ATACCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACATGTCATATGTTACAAT  >  CP000730/547046‑547316                                                                                                                                   |                                                                                                                                             ataCCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCatatat                                                                                                                                    >  1:45701/1‑141 (MQ=255)   aCCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCatatatat                                                                                                                                  >  1:276294/1‑141 (MQ=255)   aCCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCatatatat                                                                                                                                  <  2:444502/141‑1 (MQ=255)    ccGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATAtt                                                                                                                                 >  1:168054/1‑141 (MQ=255)    ccGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATAtt                                                                                                                                 <  2:397771/141‑1 (MQ=255)    ccGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATAtt                                                                                                                                 >  1:10707/1‑141 (MQ=255)           ttACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAAtttt                                                                                                                          >  1:701353/1‑141 (MQ=255)           ttACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAAtttt                                                                                                                          <  2:246926/141‑1 (MQ=255)                      cGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGCGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACat                                                                                                               >  2:363610/1‑141 (MQ=255)                        gTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACatat                                                                                                             >  1:318445/1‑141 (MQ=255)                         tACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATg                                                                                                            <  1:395875/141‑1 (MQ=255)                         tACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATg                                                                                                            >  2:236562/1‑141 (MQ=255)                              tAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTg                                                                                                       <  2:641177/141‑1 (MQ=255)                               aaaaCCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGa                                                                                                      <  1:273927/141‑1 (MQ=255)                                     tGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGtt                                                                                                >  1:507899/1‑141 (MQ=255)                                       aaGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAAGGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGa                                                                                              <  2:172097/141‑1 (MQ=255)                                            tATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAATACATTtttcatatttttgagtctacactattatttctcaaacgcatagtaataataac                                                                                         >  1:516211‑M2/1‑88 (MQ=255)                                             aTTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAata                                                                                        >  1:189740/1‑141 (MQ=255)                                              ttCAAATTAATTTTTTAATCAATTTTAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATCTGAAAACTGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAatat                                                                                       <  2:293127/141‑1 (MQ=255)                                              ttCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAatat                                                                                       <  2:471816/141‑1 (MQ=255)                                                       attTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAAAAATAATAGTGTAGACTCAAAAATATGAAATACATTtttcatatttttgagtctacactattatttctcaaacgcatagtaataataactgaaattgatt                                                                              >  1:645938‑M2/1‑77 (MQ=255)                                                              aaTCAATTTCAGTTATTATTACTATGCGTTTAAGAAATAATAGTGTAGACTCAAAAATATGAAATACATTtttcatatttttgagtctacactattatttctcaaacgcatagtaataataactgaaattgattaaaaaat                                                                       >  1:602395‑M2/1‑70 (MQ=255)                                                                    tttCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACg                                                                 <  1:416182/141‑1 (MQ=255)                                                                    tttCAGTTATTATTAATAATTGCTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACg                                                                 <  1:359553/141‑1 (MQ=255)                                                                     ttCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACgg                                                                >  2:250609/1‑141 (MQ=255)                                                                     ttCAGATATTATTACTATGCGTTTGAGGATTAATAGTGTATACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAGTATAGAGATTGATAAAACTAATACgt                                                                <  2:30399/141‑2 (MQ=255)                                                                       cAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGgt                                                              >  1:295746/1‑141 (MQ=255)                                                                         gTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGgtgt                                                            >  2:710963/1‑141 (MQ=255)                                                                                                  ataataGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAAt                                   >  1:13445/1‑141 (MQ=255)                                                                                                     ataGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTAc                                >  1:73225/1‑141 (MQ=255)                                                                                                       aGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTa                              >  1:151078/1‑141 (MQ=255)                                                                                                        gtgtAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAg                             <  1:611418/141‑1 (MQ=255)                                                                                                           tAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCtt                          >  1:638761/1‑141 (MQ=255)                                                                                                            aGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTta                         >  1:646128/1‑141 (MQ=255)                                                                                                                    aaaTATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACAt                 >  2:4681/1‑141 (MQ=255)                                                                                                                       tatGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACATGTc              <  2:73225/141‑1 (MQ=255)                                                                                                                            aaaaTGTAtttcatatttttgagtctacactattatttctcaaacgcatagtaataataactgaaattgattaaaaaattaatttgaatacacttcaggttttaacgtaccgatatatggtaagtttcggtataattcacg         <  1:55599‑M2/141‑134 (MQ=255)                                                                                                                             aaaTGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACATGTCATATGt        <  2:14265/141‑1 (MQ=255)                                                                                                                              aaTGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACATGTCATATGtt       <  1:250609/141‑1 (MQ=255)                                                                                                                              aaTGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACATGTCATATGtt       <  1:527662/141‑1 (MQ=255)                                                                                                                                  tATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAGAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACATGTCATATGTTACaa   <  1:236562/141‑1 (MQ=255)                                                                                                                                   aTTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACATGTCATATGTTACAAt  >  2:618259/1‑141 (MQ=255)                                                                                                                                   |                                                                                                                                             ATACCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACATGTCATATGTTACAAT  >  CP000730/547046‑547316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.