New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 547170	33 (0.600)	4 (0.080)	4/238	NT	11.6%	intergenic (+70/‑187)	hpt/ftsH	hypoxanthine phosphoribosyltransferase/cell division protein FtsH
	?	CP000730	= 547176	30 (0.580)					intergenic (+76/‑181)	hpt/ftsH	hypoxanthine phosphoribosyltransferase/cell division protein FtsH

AGATTATCGTGAATTATACCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACATGTCATATGT  >  CP000730/547031‑547310                                                                                                                                            |                                                                                                                                             aGATTATCGTGAATTATACCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGaaaa                                                                                                                                             >  2:109540/1‑141 (MQ=255) aGATTATCGTGAATTATACCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGaaaa                                                                                                                                             >  2:150803/1‑141 (MQ=255)  gATTATCGTGAATTATACCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGaaaaa                                                                                                                                            <  2:519934/141‑1 (MQ=255)  gATTATCGTGAATTATACCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTAAAAAATATGaaaaa                                                                                                                                            <  2:401747/141‑1 (MQ=255)        cGTGAATTATACCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAtacatttt                                                                                                                                      <  1:55599‑M1/141‑9 (MQ=255)                ataCCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCatatat                                                                                                                              >  1:45701/1‑141 (MQ=255)                  aCCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCatatatat                                                                                                                            >  1:276294/1‑141 (MQ=255)                  aCCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCatatatat                                                                                                                            <  2:444502/141‑1 (MQ=255)                   ccGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATAtt                                                                                                                           >  1:168054/1‑141 (MQ=255)                   ccGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATAtt                                                                                                                           <  2:397771/141‑1 (MQ=255)                   ccGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATAtt                                                                                                                           >  1:10707/1‑141 (MQ=255)                          ttACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAAtttt                                                                                                                    >  1:701353/1‑141 (MQ=255)                          ttACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAAtttt                                                                                                                    <  2:246926/141‑1 (MQ=255)                                     cGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGCGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACat                                                                                                         >  2:363610/1‑141 (MQ=255)                                       gTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACatat                                                                                                       >  1:318445/1‑141 (MQ=255)                                        tACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATg                                                                                                      <  1:395875/141‑1 (MQ=255)                                        tACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATg                                                                                                      >  2:236562/1‑141 (MQ=255)                                             tAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTg                                                                                                 <  2:641177/141‑1 (MQ=255)                                              aaaaCCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGa                                                                                                <  1:273927/141‑1 (MQ=255)                                                    tGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGtt                                                                                          >  1:507899/1‑141 (MQ=255)                                                      aaGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAAGGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGa                                                                                        <  2:172097/141‑1 (MQ=255)                                                           tATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAATACATTtttcatatttttgagtctacactattatttctcaaacgcatagtaataataac                                                                                   >  1:516211‑M2/1‑88 (MQ=255)                                                            aTTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAata                                                                                  >  1:189740/1‑141 (MQ=255)                                                             ttCAAATTAATTTTTTAATCAATTTTAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATCTGAAAACTGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAatat                                                                                 <  2:293127/141‑1 (MQ=255)                                                             ttCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAatat                                                                                 <  2:471816/141‑1 (MQ=255)                                                                      attTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAaatgtatttcatatttttgagtctacactattatttcttaaacgcatagtaataataactgaaattgatt                                                                        >  1:602395‑M1/1‑71 (MQ=255)                                                                      attTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAAAAATAATAGTGTAGACTCAAAAATATGAAATACATTtttcatatttttgagtctacactattatttctcaaacgcatagtaataataactgaaattgatt                                                                        >  1:645938‑M2/1‑77 (MQ=255)                                                                             aaTCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAaatgtatttcatatttttgagtctacactattatttttcaaacgcatagtaataataactgaaattgattaaaaaat                                                                 >  1:645938‑M1/1‑64 (MQ=255)                                                                             aaTCAATTTCAGTTATTATTACTATGCGTTTAAGAAATAATAGTGTAGACTCAAAAATATGAAATACATTtttcatatttttgagtctacactattatttctcaaacgcatagtaataataactgaaattgattaaaaaat                                                                 >  1:602395‑M2/1‑70 (MQ=255)                                                                                   tttCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACg                                                           <  1:416182/141‑1 (MQ=255)                                                                                   tttCAGTTATTATTAATAATTGCTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACg                                                           <  1:359553/141‑1 (MQ=255)                                                                                    ttCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACgg                                                          >  2:250609/1‑141 (MQ=255)                                                                                    ttCAGATATTATTACTATGCGTTTGAGGATTAATAGTGTATACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAGTATAGAGATTGATAAAACTAATACgt                                                          <  2:30399/141‑2 (MQ=255)                                                                                      cAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGgt                                                        >  1:295746/1‑141 (MQ=255)                                                                                        gTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAaatgtatttcatatttttgagtctacactattatttctcaaacgcatagtaataataactgaaattgattaaaaaattaatttgaata                                                      >  1:516211‑M1/1‑53 (MQ=255)                                                                                        gTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGgtgt                                                      >  2:710963/1‑141 (MQ=255)                                                                                                                 ataataGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAAt                             >  1:13445/1‑141 (MQ=255)                                                                                                                    ataGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTAc                          >  1:73225/1‑141 (MQ=255)                                                                                                                      aGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTa                        >  1:151078/1‑141 (MQ=255)                                                                                                                       gtgtAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAg                       <  1:611418/141‑1 (MQ=255)                                                                                                                          tAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCtt                    >  1:638761/1‑141 (MQ=255)                                                                                                                           aGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTta                   >  1:646128/1‑141 (MQ=255)                                                                                                                                   aaaTATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACAt           >  2:4681/1‑141 (MQ=255)                                                                                                                                      tatGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACATGTc        <  2:73225/141‑1 (MQ=255)                                                                                                                                           aaaaTGTAtttcatatttttgagtctacactattatttctcaaacgcatagtaataataactgaaattgattaaaaaattaatttgaatacacttcaggttttaacgtaccgatatatggtaagtttcggtataattcacg   <  1:55599‑M2/141‑134 (MQ=255)                                                                                                                                            aaaTGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACATGTCATATGt  <  2:14265/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                             AGATTATCGTGAATTATACCGAAACTTACCATATATCGGTACGTTAAAACCTGAAGTGTATTCAAATTAATTTTTTAATCAATTTCAGTTATTATTACTATGCGTTTGAGAAATAATAGTGTAGACTCAAAAATATGAAAAATGTATTTCATATATATTTAATTTTAGACAAGACATATGTCTTGAAAAGTTGAAAAATATAGAGATTGATAAAACTAATACGGGTGTGAATGACATTGATGTTAAGCTCAATTACTAGCTTATAAAACATGTCATATGT  >  CP000730/547031‑547310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.