mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 22 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,177,143 | 0 | C | A | 68.2% | 25.4 / 13.2 | 23 | D622E (GAC→GAA) | rpoC | RNA polymerase, beta prime subunit |
| * | CP009273 | 4,125,355 | 0 | G | T | 57.1% | 3.2 / 13.1 | 14 | L531L (CTG→CTT) | katG | catalase‑peroxidase HPI, heme b‑containing |
| * | CP009273 | 405,994 | 0 | C | A | 53.3% | ‑1.2 / 11.6 | 15 | T132K (ACG→AAG) | mak | manno(fructo)kinase |
| * | CP009273 | 256,808 | 1 | . | T | 37.5% | 0.6 / 10.7 | 8 | coding (710/1104 nt) | proB | gamma‑glutamate kinase |
| * | CP009273 | 256,808 | 2 | . | G | 37.5% | 1.2 / 11.5 | 8 | coding (710/1104 nt) | proB | gamma‑glutamate kinase |
| * | CP009273 | 256,808 | 3 | . | C | 37.5% | 0.1 / 12.8 | 8 | coding (710/1104 nt) | proB | gamma‑glutamate kinase |
| * | CP009273 | 256,810 | 1 | . | T | 37.5% | 1.2 / 10.2 | 8 | coding (712/1104 nt) | proB | gamma‑glutamate kinase |
| * | CP009273 | 4,604,169 | 1 | . | T | 37.5% | 12.8 / 10.1 | 8 | intergenic (+92/+328) | yjjV/yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| * | CP009273 | 149,243 | 1 | . | G | 33.3% | 9.7 / 18.4 | 12 | coding (57/570 nt) | yadM | putative fimbrial‑like adhesin protein |
| * | CP009273 | 149,243 | 2 | . | G | 33.3% | 9.7 / 18.4 | 12 | coding (57/570 nt) | yadM | putative fimbrial‑like adhesin protein |
| * | CP009273 | 149,243 | 3 | . | A | 33.3% | 9.7 / 16.3 | 12 | coding (57/570 nt) | yadM | putative fimbrial‑like adhesin protein |
| * | CP009273 | 149,243 | 4 | . | C | 33.3% | 9.3 / 18.8 | 12 | coding (57/570 nt) | yadM | putative fimbrial‑like adhesin protein |
| * | CP009273 | 149,243 | 5 | . | A | 33.3% | 9.7 / 16.3 | 12 | coding (57/570 nt) | yadM | putative fimbrial‑like adhesin protein |
| * | CP009273 | 854,183 | 0 | C | G | 33.3% | 19.8 / 17.1 | 18 | R112P (CGC→CCC) | ybiU | DUF1479 family protein |
| * | CP009273 | 1,247,961 | 0 | G | T | 33.3% | 14.6 / 14.0 | 18 | Q480H (CAG→CAT) | dhaR | dhaKLM operon transcription activator |
| * | CP009273 | 235,121 | 0 | G | T | 30.8% | 27.8 / 18.9 | 26 | P35T (CCT→ACT) | ykfM | lethality reduction protein, putative inner membrane protein |
| * | CP009273 | 2,637,883 | 0 | T | . | 25.0% | 41.9 / 11.5 | 16 | coding (341/432 nt) | ndk | multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'‑phosphodiesterase |
| * | CP009273 | 4,282,818 | 0 | A | . | 25.0% | 43.1 / 11.4 | 16 | coding (1379/1659 nt) | nrfE | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| * | CP009273 | 2,118,876 | 0 | A | . | 23.5% | 45.7 / 10.9 | 17 | coding (352/1224 nt) | wcaI | putative glycosyl transferase |
| * | CP009273 | 3,416,899 | 0 | A | G | 22.9% | 76.1 / 18.7 | 35 | noncoding (3/120 nt) | rrfF | 5S ribosomal RNA of rrnD operon |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3656002 | 19 (1.020) | 3 (0.160) | 3/268 | 1.3 | 14.0% | coding (2229/3114 nt) | mdtF | anaerobic multidrug efflux transporter, ArcA‑regulated |
| ? | CP009273 | 4325727 = | 18 (0.960) | coding (1122/1338 nt) | adiC | arginine:agmatine antiporter | |||||
| * | ? | CP009273 | = 3646518 | NA (NA) | 3 (0.160) | 3/264 | 1.3 | 12.2% | noncoding (73/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 3658626 = | 22 (1.180) | coding (545/825 nt) | gadX | acid resistance regulon transcriptional activator; autoactivator | |||||
| * | ? | CP009273 | = 238190 | 15 (0.800) | 3 (0.160) | 3/268 | 1.3 | 9.8% | coding (1601/2445 nt) | fadE | acyl coenzyme A dehydrogenase |
| ? | CP009273 | 2888759 = | 40 (2.140) | coding (380/861 nt) | ygcQ | putative flavoprotein | |||||