mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 92 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,177,245 | 0 | G | T | 64.6% | 9.4 / 19.5 | 51 | intergenic (‑41/+267) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 2,177,234 | 0 | C | A | 62.5% | ‑1.1 / 13.7 | 47 | intergenic (‑30/+278) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 2,177,221 | 0 | T | G | 58.3% | 2.4 / 32.2 | 48 | intergenic (‑17/+291) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 707,976 | 0 | T | G | 55.9% | 1.1 / 25.9 | 34 | intergenic (+219/‑358) | glnS/chiP | glutamine‑‑tRNA ligase/chitobiose outer membrane channel |
| * | NC_000913 | 2,177,228 | 0 | C | G | 48.6% | 9.4 / 25.4 | 52 | intergenic (‑24/+284) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 3,004,946 | 0 | G | T | 47.4% | 39.8 / 28.5 | 57 | Q281K (CAA→AAA) | ygeV | putative sigma(54)‑dependent transcriptional regulator YgeV |
| * | NC_000913 | 2,177,255 | 0 | G | T | 47.3% | ‑6.6 / 37.2 | 55 | intergenic (‑51/+257) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 454,873 | 0 | C | G | 47.1% | 11.6 / 18.9 | 38 | intergenic (+84/‑260) | bolA/tig | DNA‑binding transcriptional dual regulator BolA/trigger factor |
| * | NC_000913 | 707,981 | 0 | C | G | 45.8% | 13.1 / 18.1 | 34 | intergenic (+224/‑353) | glnS/chiP | glutamine‑‑tRNA ligase/chitobiose outer membrane channel |
| * | NC_000913 | 3,455,677 | 0 | A | T | 45.6% | 27.8 / 32.8 | 57 | N34Y (AAT→TAT) | gspC | Type II secretion system protein GspC |
| * | NC_000913 | 31,745 | 0 | T | G | 43.1% | 25.3 / 27.1 | 58 | L310R (CTG→CGG) | carB | carbamoyl phosphate synthetase subunit beta |
| * | NC_000913 | 4,220,007 | 0 | T | G | 42.5% | 20.8 / 16.2 | 40 | V471G (GTG→GGG) | aceK | isocitrate dehydrogenase kinase/phosphatase |
| * | NC_000913 | 4,220,018 | 0 | G | T | 42.5% | 35.6 / 15.8 | 40 | D475Y (GAT→TAT) | aceK | isocitrate dehydrogenase kinase/phosphatase |
| * | NC_000913 | 2,519,212 | 0 | A | C | 41.4% | 49.1 / 22.8 | 58 | intergenic (+7/+45) | yfeD/gltX | putative DNA‑binding transcriptional regulator YfeD/glutamate‑‑tRNA ligase |
| * | NC_000913 | 2,924,545 | 0 | C | A | 40.4% | 44.8 / 10.4 | 53 | intergenic (‑21/+190) | csrB/syd | small regulatory RNA CsrB/SecY‑interacting protein |
| * | NC_000913 | 1,879,848 | 0 | C | G | 40.0% | 58.1 / 15.3 | 43 | G34A (GGA→GCA) | yeaR | DUF1971 domain‑containing protein YeaR |
| * | NC_000913 | 1,879,846 | 0 | T | G | 39.5% | 34.3 / 20.3 | 43 | T35P (ACG→CCG) | yeaR | DUF1971 domain‑containing protein YeaR |
| * | NC_000913 | 1,224,912 | 0 | T | G | 39.4% | 27.5 / 11.1 | 33 | V150V (GTA→GTC) | minD | Z‑ring positioning protein MinD |
| * | NC_000913 | 3,455,669 | 0 | T | G | 39.3% | 58.4 / 16.2 | 61 | I31S (ATT→AGT) | gspC | Type II secretion system protein GspC |
| * | NC_000913 | 2,177,261 | 0 | A | T | 39.3% | 66.8 / 25.2 | 56 | intergenic (‑57/+251) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2996360 = | NA (NA) | 9 (0.120) +C |
6/254 | 5.6 | NA | pseudogene (1/399 nt) | ygeO | putative uncharacterized protein YgeO |
| ? | NC_000913 | = 2997691 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381258 = | NA (NA) | 16 (0.210) | 6/254 | 5.6 | NA | pseudogene (3/417 nt) | yaiX | putative acyltransferase, N‑terminal fragment |
| ? | NC_000913 | = 382589 | NA (NA) | noncoding (1330/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 4498181 = | NA (NA) | 14 (0.180) | 6/256 | 5.7 | NA | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4499512 | NA (NA) | intergenic (+12/+81) | insD‑6/yjgX | KpLE2 phage‑like element; IS2 insertion element protein InsB/KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment | |||||
| * | ? | NC_000913 | 2068941 = | NA (NA) | 10 (0.130) | 6/256 | 5.7 | NA | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 2070273 | NA (NA) | intergenic (‑93/‑4) | insC‑3/yoeA | CP4‑44 prophage; IS2 insertion element repressor InsA/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA | |||||
| * | ? | NC_000913 | = 2059514 | 66 (0.840) | 3 (0.040) | 3/250 | 7.1 | 4.2% | coding (333/1644 nt) | yeeO | FMN/FAD exporter |
| ? | NC_000913 | 2217489 = | 72 (0.940) | coding (1069/1158 nt) | yehY | glycine betaine ABC transporter membrane subunit YehY | |||||