mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 464,358 | 0 | T | G | 25.4% | 118.3 / 55.0 | 67 | intergenic (+50/‑44) | ybaV/fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| * | NC_000913_3_pae_pgi | 464,356 | 0 | A | T | 25.0% | 136.6 / 51.8 | 68 | intergenic (+48/‑46) | ybaV/fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| * | NC_000913_3_pae_pgi | 464,354 | 0 | C | A | 24.6% | 144.7 / 47.3 | 69 | intergenic (+46/‑48) | ybaV/fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| * | NC_000913_3_pae_pgi | 2,663,474 | 0 | A | T | 24.5% | 197.3 / 68.0 | 94 | A11A (GCA→GCT) | suhB | inositol monophosphatase |
| * | NC_000913_3_pae_pgi | 526,796 | 0 | C | G | 24.1% | 253.8 / 87.3 | 112 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,800 | 0 | A | G | 23.8% | 215.4 / 62.3 | 109 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 2,663,466 | 0 | G | T | 23.7% | 228.9 / 63.4 | 97 | V9L (GTG→TTG) | suhB | inositol monophosphatase |
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 23.1% | 211.0 / 84.6 | 117 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 2,663,482 | 0 | A | C | 22.6% | 204.1 / 72.3 | 102 | K14T (AAG→ACG) | suhB | inositol monophosphatase |
| * | NC_000913_3_pae_pgi | 1,868,865 | 1 | . | G | 20.6% | 201.8 / 65.0 | 68 | intergenic (+23/‑90) | yeaG/yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| * | NC_000913_3_pae_pgi | 1,868,859 | 0 | C | . | 20.3% | 189.3 / 51.9 | 69 | intergenic (+17/‑96) | yeaG/yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| Marginal new junction evidence (lowest skew 10 of 801 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 2068406 | 193 (2.310) | 32 (0.450) | 22/216 | 3.8 | 17.0% | pseudogene (14/159 nt) | yoeH | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913_3_pae_pgi | = 2068411 | 148 (2.070) | pseudogene (9/159 nt) | yoeH | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_pgi | 2090108 = | 201 (2.410) | 26 (0.350) | 21/224 | 4.3 | 12.7% | intergenic (+62/‑84) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| ? | NC_000913_3_pae_pgi | 2090141 = | 180 (2.430) | intergenic (+95/‑51) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase | |||||
| * | ? | NC_000913_3_pae_pgi | 2084191 = | 222 (2.660) | 26 (0.340) | 19/234 | 5.1 | 10.9% | intergenic (+8/+35) | sbcB/yeeD | exodeoxyribonuclease I; exonuclease I/putative TusA family sulfurtransferase |
| ? | NC_000913_3_pae_pgi | 2084215 = | 217 (2.800) | intergenic (+32/+11) | sbcB/yeeD | exodeoxyribonuclease I; exonuclease I/putative TusA family sulfurtransferase | |||||
| * | ? | NC_000913_3_pae_pgi | = 2079003 | 171 (2.050) | 20 (0.270) | 16/224 | 5.6 | 12.2% | intergenic (+72/+29) | yoeF/yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein |
| ? | NC_000913_3_pae_pgi | = 2079004 | 136 (1.830) | intergenic (+73/+28) | yoeF/yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein | |||||
| * | ? | NC_000913_3_pae_pgi | 3426836 = | NA (NA) | 19 (0.240) | 17/238 | 5.7 | NA | intergenic (‑53/+122) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala |
| ? | NC_000913_3_pae_pgi | 3426854 = | NA (NA) | intergenic (‑71/+104) | rrlD/alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala | |||||
| * | ? | NC_000913_3_pae_pgi | = 2726057 | 84 (1.010) | 16 (0.210) | 16/230 | 5.8 | 17.3% | intergenic (‑311/+12) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_pae_pgi | 4040842 = | NA (NA) | intergenic (+206/+64) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_pgi | = 225281 | NA (NA) | 21 (0.260) | 17/242 | 5.8 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_pgi | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_pgi | = 3946688 | 94 (1.130) | 19 (0.240) | 16/240 | 6.1 | 17.5% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_pgi | = 4171601 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913_3_pae_pgi | = 3944978 | NA (NA) | 22 (0.280) | 16/240 | 6.1 | 44.4% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_pgi | = 4038811 | 29 (0.350) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_pae_pgi | 2727891 = | NA (NA) | 22 (0.280) | 16/240 | 6.1 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_pae_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||