mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_KO_pgi | 4,294,494 | 0 | C | T | 26.9% | 76.2 / 31.3 | 53 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_KO_pgi | 4,477,454 | 0 | A | T | 24.1% | 48.5 / 10.1 | 29 | intergenic (+131/+14) | rraB/yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| * | NC_000913_3_KO_pgi | 4,477,446 | 0 | A | T | 20.7% | 61.0 / 10.6 | 29 | intergenic (+123/+22) | rraB/yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| * | NC_000913_3_KO_pgi | 2,229,322 | 0 | C | G | 20.6% | 66.8 / 17.1 | 34 | intergenic (+257/+116) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| * | NC_000913_3_KO_pgi | 2,229,323 | 0 | C | G | 20.6% | 66.5 / 18.6 | 34 | intergenic (+258/+115) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| Marginal new junction evidence (lowest skew 10 of 170 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | 501446 = | NA (NA) | 4 (0.160) +43 bp |
4/196 | 3.5 | 13.2% | noncoding (3/84 nt) | REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_KO_pgi | 2282818 = | 38 (1.040) | intergenic (+17/+122) | rplY/yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein | |||||
| * | ? | NC_000913_3_KO_pgi | = 2242212 | 27 (0.740) | 6 (0.170) | 6/268 | 3.8 | 20.1% | coding (756/1158 nt) | yeiB | DUF418 family putative inner membrane protein |
| ? | NC_000913_3_KO_pgi | = 2242221 | 22 (0.640) | coding (747/1158 nt) | yeiB | DUF418 family putative inner membrane protein | |||||
| * | ? | NC_000913_3_KO_pgi | 111477 = | NA (NA) | 7 (0.200) | 6/268 | 3.8 | 15.6% | noncoding (48/200 nt) | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site |
| ? | NC_000913_3_KO_pgi | 111509 = | 38 (1.100) | noncoding (80/200 nt) | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_KO_pgi | = 1983561 | 73 (2.010) | 5 (0.140) | 5/268 | 4.2 | 7.2% | coding (1509/1515 nt) | araG | L‑arabinose ABC transporter ATPase |
| ? | NC_000913_3_KO_pgi | = 1983596 | 60 (1.740) | coding (1474/1515 nt) | araG | L‑arabinose ABC transporter ATPase | |||||
| * | ? | NC_000913_3_KO_pgi | = 201031 | 29 (0.800) | 5 (0.150) | 5/266 | 4.2 | 14.8% | coding (61/1026 nt) | lpxD | UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase |
| ? | NC_000913_3_KO_pgi | = 201041 | 30 (0.870) | coding (71/1026 nt) | lpxD | UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase | |||||
| * | ? | NC_000913_3_KO_pgi | = 4404097 | 45 (1.240) | 5 (0.140) | 5/276 | 4.3 | 10.1% | coding (977/1299 nt) | purA | adenylosuccinate synthetase |
| ? | NC_000913_3_KO_pgi | = 4404109 | 45 (1.260) | coding (989/1299 nt) | purA | adenylosuccinate synthetase | |||||
| * | ? | NC_000913_3_KO_pgi | = 4145334 | 23 (0.630) | 7 (0.200) | 5/272 | 4.3 | 23.3% | coding (1340/2298 nt) | pflD | putative glycine radical domain‑containing pyruvate formate‑lyase |
| ? | NC_000913_3_KO_pgi | = 4145346 | 24 (0.680) | coding (1352/2298 nt) | pflD | putative glycine radical domain‑containing pyruvate formate‑lyase | |||||
| * | ? | NC_000913_3_KO_pgi | 1190698 = | 38 (1.040) | 5 (0.140) | 5/270 | 4.3 | 11.7% | coding (1289/1371 nt) | purB | adenylosuccinate lyase |
| ? | NC_000913_3_KO_pgi | 1190713 = | 39 (1.120) | coding (1274/1371 nt) | purB | adenylosuccinate lyase | |||||
| * | ? | NC_000913_3_KO_pgi | = 2374893 | 36 (0.990) | 5 (0.140) | 5/280 | 4.4 | 12.7% | coding (111/1356 nt) | menE | O‑succinylbenzoate‑CoA ligase |
| ? | NC_000913_3_KO_pgi | = 2374914 | 33 (0.910) | coding (90/1356 nt) | menE | O‑succinylbenzoate‑CoA ligase | |||||
| * | ? | NC_000913_3_KO_pgi | 3654539 = | 33 (0.910) | 4 (0.120) | 4/258 | 4.5 | 11.1% | intergenic (+12/‑144) | slp/dctR | outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport |
| ? | NC_000913_3_KO_pgi | 3654568 = | 34 (1.020) | intergenic (+41/‑115) | slp/dctR | outer membrane lipoprotein/Putative LuxR family repressor for dicarboxylate transport | |||||