New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_KO_pgi	= 1983561	73 (2.010)	5 (0.140)	5/268	4.2	7.2%	coding (1509/1515 nt)	araG	L‑arabinose ABC transporter ATPase
	?	NC_000913_3_KO_pgi	= 1983596	60 (1.740)					coding (1474/1515 nt)	araG	L‑arabinose ABC transporter ATPase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_KO_pgi/1983434‑1983561 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcaCTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGGCGTATCTGGGATCAGTACGGCATGCTGGTGGTGT  <  NC_000913_3_KO_pgi/1983596‑1983450                                                                                                                                                                                                                                                                                     ATAAAGATCACCGCAAACACCACCACCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGTTGCGCCAGACCCCCATGTAGAAACAGAAGACATCATACTCTCCTTACTCAGGCACTGATCCTTGCGATGCCTAAA                                                                                                                                <  1:556632/149‑1            CGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTCAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGC                                                                                                                     >  2:404479/1‑149                     attCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTC                                                                                                                                                          <  1:132856/100‑1                     attCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTC                                                                                                                                                          >  2:132856/4‑103                          GCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTCAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAA                                                                                                       <  1:404479/149‑1                                                                                                             ATACTCTCCTTACTCAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTAT                                                                                              <  1:15720/75‑1                                                                                                             ATACTCTCCTTACTCAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTAT                                                                                              >  2:15720/1‑75                                                                                                                          TCAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTC                                                                                     <  1:113134/71‑1                                                                                                                          TCAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTC                                                                                     >  2:113134/1‑71                                                                                                                           CAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGGTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGGCGTATCTGGGATCAGTACGGCATGCTGGTG      <  2:427625/149‑1                                                                                                                             GGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGGCGTATCTGGGATCAGTACGGCATGCTGGTGGT    <  1:115820/149‑1                                                                                                                              GCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGACGTATCTGGGATCAGTACGCCAGCCTGGTGGTG   >  2:592375/1‑149                                                                                                                               CACTGAGCCTTGCGATCCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGGCGTATCTGGGATCAGTACGGCATGCTGGTGGTGT  >  1:556678/1‑149                                                                                                                                ACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATT                                              >  1:372457/1‑104                                                                                                                                ACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATT                                              <  2:372457/104‑1                                                                                                                                                                                                                                                                                     ATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_KO_pgi/1983434‑1983561 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcaCTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGGCGTATCTGGGATCAGTACGGCATGCTGGTGGTGT  <  NC_000913_3_KO_pgi/1983596‑1983450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.