mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_KO_pgi | 4,294,494 | 0 | C | T | 32.7% | 124.1 / 90.2 | 107 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 150 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | 4541116 = | 84 (0.960) | 14 (0.170) | 14/262 | 8.3 | 14.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_KO_pgi | 4541430 = | 83 (1.010) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_KO_pgi | = 4281663 | 89 (1.010) | 10 (0.120) | 10/260 | 10.0 | 10.7% | intergenic (‑154/+24) | yjcF/actP | pentapeptide repeats protein/acetate transporter |
| ? | NC_000913_3_KO_pgi | = 4281667 | 85 (1.040) | intergenic (‑158/+20) | yjcF/actP | pentapeptide repeats protein/acetate transporter | |||||
| * | ? | NC_000913_3_KO_pgi | = 3140200 | 83 (0.950) | 10 (0.120) | 9/260 | 10.5 | 11.6% | coding (119/342 nt) | hybF | protein involved with the maturation of hydrogenases 1 and 2 |
| ? | NC_000913_3_KO_pgi | = 3140206 | 76 (0.930) | coding (113/342 nt) | hybF | protein involved with the maturation of hydrogenases 1 and 2 | |||||
| * | ? | NC_000913_3_KO_pgi | = 3427065 | NA (NA) | 9 (0.110) | 9/262 | 10.6 | NA | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913_3_KO_pgi | = 3427068 | NA (NA) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913_3_KO_pgi | 3288017 = | 96 (1.090) | 8 (0.100) | 8/250 | 10.7 | 8.6% | intergenic (+7/‑73) | yraH/yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| ? | NC_000913_3_KO_pgi | 3288049 = | 85 (1.080) | intergenic (+39/‑41) | yraH/yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone | |||||
| * | ? | NC_000913_3_KO_pgi | 225468 = | 24 (0.270) | 8 (0.100) | 8/262 | 11.1 | 26.3% | intergenic (+11/‑32) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913_3_KO_pgi | = 3427068 | NA (NA) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913_3_KO_pgi | = 2904026 | 124 (1.410) | 8 (0.100) | 8/266 | 11.3 | 6.5% | intergenic (+652/+721) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | NC_000913_3_KO_pgi | = 2904030 | 113 (1.350) | intergenic (+656/+717) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | NC_000913_3_KO_pgi | 659191 = | 85 (0.970) | 7 (0.090) | 7/254 | 11.4 | 8.9% | intergenic (+41/+60) | tatE/lipA | TatABCE protein translocation system subunit/lipoate synthase |
| ? | NC_000913_3_KO_pgi | 659221 = | 67 (0.840) | intergenic (+71/+30) | tatE/lipA | TatABCE protein translocation system subunit/lipoate synthase | |||||
| * | ? | NC_000913_3_KO_pgi | 232553 = | 118 (1.340) | 7 (0.090) | 7/256 | 11.5 | 6.2% | intergenic (+4/+44) | yafE/mltD | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D |
| ? | NC_000913_3_KO_pgi | 232584 = | 104 (1.300) | intergenic (+35/+13) | yafE/mltD | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D | |||||
| * | ? | NC_000913_3_KO_pgi | = 859192 | 92 (1.050) | 7 (0.080) | 7/264 | 11.8 | 7.2% | intergenic (‑131/+21) | ybiU/ybiV | DUF1479 family protein/sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase |
| ? | NC_000913_3_KO_pgi | = 859197 | 93 (1.120) | intergenic (‑136/+16) | ybiU/ybiV | DUF1479 family protein/sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase | |||||