| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 4281663 | 89 (1.010) | 10 (0.120) | 10/260 | 10.0 | 10.7% | intergenic (‑154/+24) | yjcF/actP | pentapeptide repeats protein/acetate transporter |
| ? | NC_000913_3_KO_pgi | = 4281667 | 85 (1.040) | intergenic (‑158/+20) | yjcF/actP | pentapeptide repeats protein/acetate transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCATAAAATATCCTTATAATTAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_KO_pgi/4281505‑4281663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccccggtcGTCTGACCGGGGAATACTCTTCCTCTCCCAAATGCATCACCTTTTCCCATAATATTAAACAAATAAACTCATTAAAAAATGAGCGATTTTTGACAGTCGTAGAAAATGATAATGCAGAGAATATGCCTTTTCTTTCTTGTTAATT < NC_000913_3_KO_pgi/4281667‑4281523 CGCATAAAATATCCTTATAATTAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGACCATTTTTTAATGAGTTTATTGTTTTAATATTATGGGAAAAGGGGATGCATGTTGGAGAGGAAGAGGAT < 2:778910/150‑1 AAAATATCCTTATAATTAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCC > 3:298140/1‑150 TCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCGTCTGACCGGGGAA < 1:235896/103‑1 TCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCGTCTGACCGGGGAA > 2:235896/1‑103 CATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCGTCTGACCGGGGAATACTCTT < 1:807030/98‑1 CATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCGTCTGACCGGGGAATACTCTT > 2:807030/1‑98 TTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCGTCTGACCGGGGAATA < 4:42873/90‑1 TTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTCGTCTGACCGGGGAATA > 3:42873/1‑90 TGCATTTGGGAGAGGAAGAGTATTCCCCGGTCGTCTGACCGGGGAATACTCTTCCTCTCCCAAATGCATCACCTTTTCCCATAATATTAAAC > 4:552434/1‑92 TGCATTTGGGAGAGGAAGAGTATTCCCCGGTCGTCTGACCGGGGAATACTCTTCCTCTCCCAAATGCATCACCTTTTCCCATAATATTAAAC < 3:552434/92‑1 GAAGAGTATTCCCCGGTCGTCTGACCGGGGAATACTCTTCCTCTCCCAAATGCATCACCTTTTCCCATAATATTAAACAAATAAACTCATTAAAAAATGAGCGATTTTTGACAGTCGTAGAAAATGATAATGCAGA > 2:488799/1‑136 GAAGAGTATTCCCCGGTCGTCTGACCGGGGAATACTCTTCCTCTCCCAAATGCATCACCTTTTCCCATAATATTAAACAAATAAACTCATTAAAAAATGAGCGATTTTTGACAGTCGTAGAAAATGATAATGCAGA < 1:488799/136‑1 TTCCCCGGTCGTCTGACCGGGGAATACTCTTCCTCTCCCAAATGCATCACCTTTTCCCATAATATTAAACAAATAAACTCATTAAAAAATGAGCGATTTTTGACAGTCGTAGAAAATGATAATGCAGAGAATATGCCTTTTCTTTCTTGT < 2:560991/150‑1 CCCGGTCGTCTGACCGGGGAATACTCTTCCTCTCCCAAATGCATCACCTTTTCCCATAATATTAAACAAATAAACTCATTAAAAAATGAGCGATTTTTGACAGTCGTAGAAAATGATAATGCAGAGACACGTCCGTTTCTTTCTTGTTAA > 3:299542/1‑150 CCCGGTCGTCTGACCGGGGAATACTCTTCCTCTCCCAAATGCATCACCTTTTCCCATAATATTAAACAAATAAACTCATTAAAAAATGAGCGATTTTTGACAGTCGTAGAAAATGATAATGCAGAGAATATGCCTTTTCTTTCTTGTTAA > 3:339019/1‑150 CCGGTCGTCTGACCGGGGAATACTCTTCCTCTCCCAAATGCATCACCTTTTCCCATAATATTAAACAAATAAACTCATTAAAAAATGAGCGATTTTTGACAGTCGTAGAAAATGATAATGCAGAGAATATGCCTTTTCTTTCTTGTTAAT > 1:89427/1‑150 CGGTCGTCTGACCGGGGAATACTCTTCCTCTCCCAAATGCATCACCTTTTCCCATAATATTAAACAAATAAACTCATTAAAAAATGAGCGATTTTTGACAGTCGTAGAAAATGATAATGCAGAGAATATGCCTTTTCTTTCTTGTTAATT < 1:247163/150‑1 CGCATAAAATATCCTTATAATTAACAAGAAAGAAAAGGCATATTCTCTGCATTATCATTTTCTACGACTGTCAAAAATCGCTCATTTTTTAATGAGTTTATTTGTTTAATATTATGGGAAAAGGTGATGCATTTGGGAGAGGAAGAGTATTCCCCGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_KO_pgi/4281505‑4281663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccccggtcGTCTGACCGGGGAATACTCTTCCTCTCCCAAATGCATCACCTTTTCCCATAATATTAAACAAATAAACTCATTAAAAAATGAGCGATTTTTGACAGTCGTAGAAAATGATAATGCAGAGAATATGCCTTTTCTTTCTTGTTAATT < NC_000913_3_KO_pgi/4281667‑4281523 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |