mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 32.5% | 425.5 / 287.4 | 344 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 20.7% | 665.1 / 140.1 | 264 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 1658 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 1468681 | NA (NA) | 171 (1.280) +44 bp |
12/108 | 13.3 | 54.7% | coding (146/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_bme_pgi | 1650843 = | 259 (1.060) | intergenic (+1/‑2) | ydfE/insD1 | Qin prophage; pseudogene;Phage or Prophage Related/IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related | |||||
| * | ? | NC_000913_3_bme_pgi | 225078 = | NA (NA) | 92 (0.410) | 20/182 | 17.3 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 1287692 | 197 (0.810) | 11 (0.080) +45 bp |
6/106 | 17.4 | 8.4% | intergenic (‑70/+90) | tyrT/purU | tRNA‑Tyr/formyltetrahydrofolate hydrolase |
| ? | NC_000913_3_bme_pgi | 4175472 = | 252 (1.030) | noncoding (1/85 nt) | tyrU | tRNA‑Tyr | |||||
| * | ? | NC_000913_3_bme_pgi | = 381669 | NA (NA) | 89 (0.390) | 19/182 | 17.8 | NA | coding (319/366 nt) | insC1 | IS2 repressor TnpA |
| ? | NC_000913_3_bme_pgi | = 381695 | NA (NA) | coding (345/366 nt) coding (22/906 nt) |
insC1 insD1 |
IS2 repressor TnpA IS2 transposase TnpB |
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| * | ? | NC_000913_3_bme_pgi | = 580768 | 227 (0.930) | 31 (0.150) | 15/164 | 18.2 | 14.6% | intergenic (‑323/‑66) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913_3_bme_pgi | = 580793 | 173 (0.850) | intergenic (‑348/‑41) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913_3_bme_pgi | 224059 = | NA (NA) | 86 (0.380) | 18/182 | 18.3 | NA | noncoding (289/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | 224082 = | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_bme_pgi | 2728214 = | NA (NA) | 116 (0.500) | 19/188 | 18.4 | NA | noncoding (971/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_bme_pgi | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_bme_pgi | 716720 = | 288 (1.180) | 17 (0.110) +34 bp |
8/128 | 18.8 | 8.2% | intergenic (‑123/+1) | ybfG/ybfI | pseudogene/pseudogene |
| ? | NC_000913_3_bme_pgi | 720995 = | 302 (1.240) | intergenic (+155/+61) | ybfK/kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD | |||||
| * | ? | NC_000913_3_bme_pgi | = 4326285 | NA (NA) | 22 (0.150) +40 bp |
6/116 | 18.9 | NA | noncoding (483/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4374597 | NA (NA) | noncoding (99/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_bme_pgi | = 4326185 | 108 (0.440) | 22 (0.150) +40 bp |
6/116 | 18.9 | 25.7% | noncoding (383/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4374597 | NA (NA) | noncoding (99/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||