| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | DH1 | 163,135 | Δ95,041 bp | hokA–yhhJ | 83 genes hokA, cspA, yiaG, yiaF, ghrB, yiaD, bisC, yiaC, tag, yhjY, yhjX, eptB, ECDH1_RS00855, ECDH1_RS00860, dppA, ECDH1_RS00870, dppB, dppC, dppD, dppF, yhjV, ECDH1_RS00900, ldrD, bcsG, bcsF, bcsE, yhjR, ECDH1_RS00930, bcsA, bcsB, bcsZ, bcsC, yhjK, dctA, yhjJ, kdgK, ECDH1_RS00975, yhjH, yhjG, yhjE, yhjD, yhjC, yhjB, treF, yhjA, gadA, gadX, gadW, mdtF, mdtE, ECDH1_RS01045, gadE, hdeD, hdeA, hdeB, yhiD, dctR, slp, slp, insH1, ECDH1_RS01095, arsC, arsB, arsR, ECDH1_RS01115, ECDH1_RS01120, gor, rlmJ, prlC, rsmJ, tppB, uspA, uspB, pitA, yhiN, yhiM, ECDH1_RS01175, ECDH1_RS01180, ECDH1_RS01185, yhiJ, yhiI, rbbA, yhhJ |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | DH1 | 163135 | 258175 | 95041 | 570 [3] | [5] 582 | hokA–yhhJ | 83 genes hokA, cspA, yiaG, yiaF, ghrB, yiaD, bisC, yiaC, tag, yhjY, yhjX, eptB, ECDH1_RS00855, ECDH1_RS00860, dppA, ECDH1_RS00870, dppB, dppC, dppD, dppF, yhjV, ECDH1_RS00900, ldrD, bcsG, bcsF, bcsE, yhjR, ECDH1_RS00930, bcsA, bcsB, bcsZ, bcsC, yhjK, dctA, yhjJ, kdgK, ECDH1_RS00975, yhjH, yhjG, yhjE, yhjD, yhjC, yhjB, treF, yhjA, gadA, gadX, gadW, mdtF, mdtE, ECDH1_RS01045, gadE, hdeD, hdeA, hdeB, yhiD, dctR, slp, slp, insH1, ECDH1_RS01095, arsC, arsB, arsR, ECDH1_RS01115, ECDH1_RS01120, gor, rlmJ, prlC, rsmJ, tppB, uspA, uspB, pitA, yhiN, yhiM, ECDH1_RS01175, ECDH1_RS01180, ECDH1_RS01185, yhiJ, yhiI, rbbA, yhhJ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 163134 | 3 (0.010) | 559 (1.210) | 239/298 | 0.0 | 99.3% | intergenic (‑51/‑29) | insJ/hokA | transposase/protein HokA |
| ? | DH1 | 258176 = | 5 (0.010) | intergenic (+92/+73) | yhhJ/yhhI | inner membrane transport permease YhhJ/H repeat‑associated protein yhhI | |||||
Only 100 of 570 total aligned reads displayed.
ACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTCGTTGGAAATCAACACAGGAGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCATATTAAACAGGAGAGTTATGAGCTGG > DH1/162985‑163283 | aCGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATCGCTGCAGTACATACTgaactg > 8:1334876‑M1/1‑144 (MQ=255) gTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGCGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCACTACATACTgaactgacc > 4:1199841‑M1/1‑142 (MQ=255) gCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccc < 7:1096102‑M1/151‑12 (MQ=255) gagaTGATCCTGTAACCATCATCAGTTCTGAACTAGTCATTCACGACTTCAAGGCGCATTTCAAAACGGAATTTTGGCATTGACATATTAGGGCCTATTCCATTTCATCGACCAACAAAATCGCTCCAGTACAAACtgaactgacacaca > 8:1617685/1‑137 (MQ=255) atgatCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaac < 1:1386067‑M1/151‑18 (MQ=255) ccTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctgga < 1:97026‑M1/151‑23 (MQ=255) cTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggac > 8:4662‑M1/1‑128 (MQ=255) cTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggac > 3:44897‑M1/1‑128 (MQ=255) tAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagt > 1:1214150‑M1/1‑125 (MQ=255) aacatcatcaGTTGTGAAGTAGTGATTCACGACTTCAAGGCGGTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtt < 1:26034‑M1/148‑28 (MQ=255) aCCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagttt > 2:1474953‑M1/1‑123 (MQ=255) catcatCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttc > 7:1590726‑M1/1‑121 (MQ=255) catcatCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttc > 4:515573‑M1/1‑121 (MQ=255) atcatcAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttc > 1:5789‑M1/1‑120 (MQ=255) atcatcAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttc > 3:670894‑M1/1‑120 (MQ=255) atcaGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagtta < 8:608202‑M1/151‑35 (MQ=255) atcaGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagta > 6:344707‑M1/1‑117 (MQ=255) caGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaa < 1:1618664‑M1/150‑36 (MQ=255) tgtgAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAATGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccgg < 8:680856‑M1/150‑40 (MQ=255) gAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctt < 6:466294‑M1/150‑43 (MQ=255) agtagtGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggcttttt > 1:305571‑M1/1‑106 (MQ=255) agtGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgat > 6:749418‑M1/1‑103 (MQ=255) gATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatact < 4:1006280‑M1/151‑52 (MQ=255) aTTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactc < 8:1199990‑M1/151‑53 (MQ=255) tCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagtaaccggctttttgatactcag < 5:345192‑M1/150‑54 (MQ=255) gACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcct > 2:1154798‑M1/1‑93 (MQ=255) ttCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgt > 6:909953‑M1/1‑90 (MQ=255) ttCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcatgt > 8:1021881‑M1/1‑90 (MQ=255) tCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgt < 1:1688813‑M1/149‑61 (MQ=255) cAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtatt > 8:335765‑M1/1‑88 (MQ=255) aGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattc > 3:1682835‑M1/1‑86 (MQ=255) aGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattc > 6:1671287‑M1/1‑86 (MQ=255) ggCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcag < 3:840810‑M1/151‑67 (MQ=255) gcgcTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagg < 3:288247‑M1/151‑68 (MQ=255) gcTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggc < 7:1226851‑M1/151‑70 (MQ=255) ttttCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggca > 4:1126142‑M1/1‑80 (MQ=255) ttttCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggca > 5:173609‑M1/1‑80 (MQ=255) cAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagatt < 2:243420‑M1/151‑76 (MQ=255) aaaGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattac > 2:1320659‑M1/1‑74 (MQ=255) aaGGGTATTTTGGCTTTGACATATTCGGGGCTTTTACATTTCATCGTCCAACAAAATGGGTGCAGTACATTGTgaactgacacccaaaacctggagagtttcagttaaccggctttttgatactcagtcctgtattcagggctagattacg < 4:420027‑M1/151‑79 (MQ=255) aGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacg > 3:320232‑M1/1‑72 (MQ=255) gggTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacga > 6:1199490‑M1/1‑71 (MQ=255) tATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagc > 6:1782295‑M1/1‑68 (MQ=255) tATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagc > 4:1527709‑M1/1‑68 (MQ=255) tATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagc > 8:1708936‑M1/1‑68 (MQ=255) tATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagc > 8:1843856‑M1/1‑68 (MQ=255) aTTTTGGGTTTGACATATTAGGGGCTATTCCATTTCATCGTCGAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttacccggctttttgataatcagtcctgtattgagcgcaagattaagaaagcc > 3:1608104‑M1/1‑67 (MQ=255) aTTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcc > 5:443613‑M1/1‑67 (MQ=255) aTTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcc < 6:999310‑M1/151‑85 (MQ=255) ttGGCTTTGACATATTAGGGTCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccg < 4:278374‑M1/150‑87 (MQ=255) ttGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgc > 7:1315332‑M1/1‑64 (MQ=255) tGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgct > 2:395830‑M1/1‑63 (MQ=255) cTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccc > 4:137669‑M1/1‑60 (MQ=255) cTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccc > 3:1505514‑M1/1‑60 (MQ=255) cTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccc > 2:925557‑M1/1‑60 (MQ=255) ttGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggcttttcgatactcagtcctgtattcagggcaagattacgaaagcccgctccc < 3:528721‑M1/149‑92 (MQ=255) tGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccg < 3:1159349‑M1/150‑94 (MQ=255) cATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagaccgctccccgca > 2:795960‑M1/1‑54 (MQ=255) cATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccgactttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgca > 8:930192‑M1/1‑54 (MQ=255) atatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaagg > 5:1564312‑M1/1‑53 (MQ=255) atatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaagg < 7:738560‑M1/151‑99 (MQ=255) tatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTCGTTGGAAATCAACACAGGAGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGgatgat > 4:723774/1‑151 (MQ=255) atTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggac < 5:1176533‑M1/151‑101 (MQ=255) tAGGGTCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggact < 2:533823‑M1/150‑102 (MQ=255) gggCTATTCCATTTCATCGTCCAACAAAATGGTTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagccagctccccgcaaggactgacg > 4:1261962‑M1/1‑46 (MQ=255) gggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacg > 5:242270‑M1/1‑46 (MQ=255) gCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgcc < 5:1056641‑M1/151‑108 (MQ=255) cTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgcc > 1:1786726‑M1/1‑43 (MQ=255) ttCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgcc > 2:1758732‑M1/1‑40 (MQ=255) tCCATTTCATCGTCCAACAAAATGGGTGCAGTAGATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagat < 6:1038828‑M1/150‑112 (MQ=255) tCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagat < 6:1416536‑M1/150‑112 (MQ=255) ccATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatag < 2:330149‑M1/151‑114 (MQ=255) cATTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagt < 6:247353‑M1/151‑115 (MQ=255) aTTTCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtt > 3:198858‑M1/1‑36 (MQ=255) ttCATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagttt < 8:1505583‑M1/150‑117 (MQ=255) cATCGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttct < 7:1817108‑M1/150‑119 (MQ=255) cGTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtcc < 4:1624815‑M1/151‑123 (MQ=255) gTCCAACAAAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtcc > 6:627405‑M1/1‑28 (MQ=255) acaaAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttccgtccatggct < 1:1042808‑M1/151‑129 (MQ=255) caaAATGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctg < 1:779573‑M1/151‑130 (MQ=255) aaaaTGGGTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagagagtttctgtccatggctgg > 2:1628961‑M1/1‑21 (MQ=255) gggTGCAGTACATACTgaactgaccgccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgctttt < 5:670394‑M1/150‑135 (MQ=255) gggTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttc > 1:854109‑M1/1‑16 (MQ=255) gggTGCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttc < 2:1084247‑M1/151‑136 (MQ=255) gCAGTACATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcat < 7:1417016‑M1/151‑140 (MQ=255) aCATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttac > 1:472008‑M1/1‑7 (MQ=255) aCATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttac > 7:279971‑M1/1‑7 (MQ=255) aCATACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatctta < 7:4677‑M1/150‑144 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagccctctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtc > 6:1583485‑M1/1‑4 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtg > 6:1461913‑M1/1‑4 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtc > 5:831614‑M1/1‑4 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtc > 8:1394435‑M1/1‑4 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtc > 7:848092‑M1/1‑4 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtc > 7:683581‑M1/1‑4 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtc > 3:1292038‑M1/1‑4 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtc > 5:1449755‑M1/1‑4 (MQ=255) tACTgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgaatcttacgtc > 8:549297‑M1/1‑4 (MQ=255) ctgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtctt > 4:860182‑M1/1‑2 (MQ=255) tgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtctt > 2:1699695‑M1/1‑1 (MQ=255) tgaactgacccccaaaacctggacagtttcagttaaccggctttttgatactcagtcctgtattcagggcaagattacgaaagcccgctccccgcaaggactgacgccagatagtttctgtccatggctgcttttcgcatcttacgtctt > 3:1001850‑M1/1‑1 (MQ=255) | ACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACATACTCGTTGGAAATCAACACAGGAGGCTGGGAATGCCGCAGAAATATAGATTACTTTCTTTAATAGTGATTTGTTTCACGCTTTTATTTTTCACCTGGATGATAAGAGATTCACTGTGTGAATTGCATATTAAACAGGAGAGTTATGAGCTGG > DH1/162985‑163283 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |