| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2785546 = | 15 (0.390) | 3 (0.080) | 3/268 | NT | 17.4% | intergenic (‑537/+214) | ypjC/ileY | pseudogene/tRNA‑Ile |
| ? | NC_000913 | 2785568 = | 14 (0.370) | intergenic (‑559/+192) | ypjC/ileY | pseudogene/tRNA‑Ile | |||||
ATCATCAGTGAGCGAACAGAGAATAGTTCAGTGATTTGAGTAATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCAGCCCTCATTCGAAACCACCCACCGCACTTCTTCCTTGAAATGGCGTTAGTCATGAAATATAGACCGCCATCGAGT > NC_000913/2785420‑2785716 | atcatcAGTGAGCGAACAGAGAATAGTTCAGTGATTTGAGTAATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCAt < 1:321254/149‑1 (MQ=255) gAGCGAACAGAGAATAGTTCAGTGATTTGAGTAATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAg < 1:104629/149‑1 (MQ=255) cgtaCAGAGAATAGTTCAGTGATTGGAGTAATTCACATGATTGACTGATCGGGTATAATAAATGATAATAATCTGAGTTTATCGTTAATTACGTAATTCCACTTGTTAGCAATATTACCGCTTGGCATAACAAGCATTTTTATCAGGTa > 2:445110/4‑149 (MQ=255) ttcaaggaagaagtgcggtgggtggtttcgaatgagggctggtgttttggtacgtggcacgccactgcaatgtatttatccatcagtactcattcaaaagtacctggaaaaaatgcccgcttggcatagcaggcaTTTTTTCCAGGTAc > 1:561027‑M2/136‑149 (MQ=255) aaCAGAGAATAGTTCAGTGATTTGAGTAATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACt > 1:537897/1‑149 (MQ=255) gTAATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACGGATGGATAAAt > 1:628156/1‑149 (MQ=255) tgcgttgttttggtacgtggcacgccactccactgtatctagccatcagtactcattcaaaagtacctggaaaaaatgcccgctgggtatagcaggcaTTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTg < 2:561027‑M2/51‑1 (MQ=255) ttggtgtgttgggacgtggcctgccactgcaatgtatttatccatcggtagtcattcaaaagtacctggaaaaaaTGCTCGCTTGGGATAGGAGTGATTTTTGCCAGGGACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTgg > 2:505783‑M1/76‑149 (MQ=255) aTTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATCAATAAATTGCAGTgg > 2:299031/1‑149 (MQ=255) aaaTGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGt < 1:190059/149‑1 (MQ=255) gTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTAcc > 1:182705/1‑149 (MQ=255) aagaaaTGATAATCCTGTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGTAATTTGCCCGCTTGGCATAGCAGGCATTTTTTTCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCaaaa < 1:567603/146‑1 (MQ=255) ccactgcaatgtatttatccatcagtactcattcaaaagtccctggcaaaaatcactcctatcccaagcgagcaTTTTTTCCAGGTACTTTTGAATGACTACCGATGGATAAATACATTGCAGTGGCAGGCCACGTCCCAACACACcaa > 2:505783‑M2/75‑148 (MQ=255) cactgcaatgtatttatccatcagtactcattcaaaagtacctggaaaaaaTGCCTGCTATACCCAGCGGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGCTAGATACAGTGGAGTGGCGTGCCACGTAccaaaacaacgca < 2:561027‑M1/98‑6 (MQ=255) ataCTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGAGGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCGGCCCTc > 2:376719/1‑149 (MQ=255) tttATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCAGCCCTCATTCGAAacc > 1:561275/1‑149 (MQ=255) cacaTGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCAGGTATCAAAACACCAGCCCTCATTCGAAACCACCCACCGCACTTCTTCCTTGa > 1:536409/1‑149 (MQ=255) gtacctggaaaaaaTGCCTGCTATGCCAAGCGGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCAGCCCTCATTCGAAACCACCCACCGCACTTCTTCCTTGaa > 1:561027‑M1/15‑149 (MQ=255) cAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCAGCCCTCATTCGAAACCACCCACCGCACTTCTTCCTTGAAATGGCGTTa > 2:576276/1‑149 (MQ=255) CCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCAGCCCTCATTCGAAACCACCCACCGCACTTCTTCCTTGAAATGGCGTTAGTCATGaa < 2:533913‑M1/149‑1 (MQ=255) gCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAGTACATTGCAGTTGCGGGCCACGTACCAAAACACCAGCCCTCATTGGAAACCACCCACCCCACGTCTTCCTTCAACTGGCGTTAGTCACGCAAtataaa > 2:106278/1‑147 (MQ=255) gCATAGCAGGCATTTTTTCAAGGAACTTGTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCAGCCCTCATTCGAAACCACCCCCCGCACTTCTTCCTTGAAATGGCGTTAGTCATGAAAtttaaa > 2:669383/1‑147 (MQ=255) ttttttCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCAGCCCTCATTCGAAACCACCCACCGCACTTCTTCCTTGAAATGGCGTTAGTCATGAAATATAGACGGCCAACGAGt > 1:345509/1‑149 (MQ=255) | ATCATCAGTGAGCGAACAGAGAATAGTTCAGTGATTTGAGTAATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCAGCCCTCATTCGAAACCACCCACCGCACTTCTTCCTTGAAATGGCGTTAGTCATGAAATATAGACCGCCATCGAGT > NC_000913/2785420‑2785716 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |