New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2785546 =	15 (0.390)	3 (0.080)	3/268	NT	17.4%	intergenic (‑537/+214)	ypjC/ileY	pseudogene/tRNA‑Ile
	?	NC_000913	2785568 =	14 (0.370)					intergenic (‑559/+192)	ypjC/ileY	pseudogene/tRNA‑Ile

GTACTCACTTATCATCAGTGAGCGAACAGAGAATAGTTCAGTGATTTGAGTAATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCAGCCCTCATTCGAAACCACCCACCGCACTTCTTCCTTGAAATGGCGTTA  >  NC_000913/2785410‑2785689                                                                                                                                         |                                                                                                                                                gTACTCACTTGTCATCAGTGAGCGAACAGAGAATAGTTCAGTGATTTGAGTGATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGCCa                                                                                                                                     >  2:520756/1‑149 (MQ=255)    cTCACTTATCATCAGAGAGCGAACAGAGAATAGTTCAGTGATTTGAGTAATTAACCTGATTAAATGAAGCGGTATAATAAATGATAATACTCTGCCTTTCTCGTTCATTACTTAATTCCACATGTAATCAATTTGCCCGCTTGGCATAg                                                                                                                                  <  2:63786/149‑1 (MQ=255)      cACTTATCATCAGTGAGCGAACAGAGAATAGTTCAGTGATTTGAGTAATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCa                                                                                                                                >  2:439424/1‑149 (MQ=255)           atcatcAGTGAGCGAACAGAGAATAGTTCAGTGATTTGAGTAATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCAt                                                                                                                           <  1:321254/149‑1 (MQ=255)                    gAGCGAACAGAGAATAGTTCAGTGATTTGAGTAATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAg                                                                                                                  <  1:104629/149‑1 (MQ=255)                       cgtaCAGAGAATAGTTCAGTGATTGGAGTAATTCACATGATTGACTGATCGGGTATAATAAATGATAATAATCTGAGTTTATCGTTAATTACGTAATTCCACTTGTTAGCAATATTACCGCTTGGCATAACAAGCATTTTTATCAGGTa                                                                                                               >  2:445110/4‑149 (MQ=255)                         aaCAGAGAATAGTTCAGTGATTTGAGTAATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACt                                                                                                             >  1:537897/1‑149 (MQ=255)                                                  gTAATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACGGATGGATAAAt                                                                                    >  1:628156/1‑149 (MQ=255)                                                              ttggtgtgttgggacgtggcctgccactgcaatgtatttatccatcggtagtcattcaaaagtacctggaaaaaaTGCTCGCTTGGGATAGGAGTGATTTTTGCCAGGGACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTgg                                                                        >  2:505783‑M1/76‑149 (MQ=255)                                                              aTTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATCAATAAATTGCAGTgg                                                                        >  2:299031/1‑149 (MQ=255)                                                                 aaaTGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGt                                                                     <  1:190059/149‑1 (MQ=255)                                                                           gTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTAcc                                                           >  1:182705/1‑149 (MQ=255)                                                                               aagaaaTGATAATCCTGTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGTAATTTGCCCGCTTGGCATAGCAGGCATTTTTTTCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCaaaa                                                       <  1:567603/146‑1 (MQ=255)                                                                                      cactgcaatgtatttatccatcagtactcattcaaaagtacctggaaaaaaTGCCTGCTATACCCAGCGGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGCTAGATACAGTGGAGTGGCGTGCCACGTAccaaaacaacgca                                                <  2:561027‑M1/98‑6 (MQ=255)                                                                                          ataCTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGAGGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCGGCCCTc                                            >  2:376719/1‑149 (MQ=255)                                                                                                    tttATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCAGCCCTCATTCGAAacc                                  >  1:561275/1‑149 (MQ=255)                                                                                                                          cacaTGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCAGGTATCAAAACACCAGCCCTCATTCGAAACCACCCACCGCACTTCTTCCTTGa            >  1:536409/1‑149 (MQ=255)                                                                                                                           gtacctggaaaaaaTGCCTGCTATGCCAAGCGGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCAGCCCTCATTCGAAACCACCCACCGCACTTCTTCCTTGaa           >  1:561027‑M1/15‑149 (MQ=255)                                                                                                                                    cAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCAGCCCTCATTCGAAACCACCCACCGCACTTCTTCCTTGAAATGGCGTTa  >  2:576276/1‑149 (MQ=255)                                                                                                                                         |                                                                                                                                                GTACTCACTTATCATCAGTGAGCGAACAGAGAATAGTTCAGTGATTTGAGTAATTAACCTGATTAAATGAAGGGGTATAATAAATGATAATACTCTGGCTTTATCGTTAATTACTTAATTCCACATGTAAGCAATTTGCCCGCTTGGCATAGCAGGCATTTTTTCCAGGTACTTTTGAATGAGTACTGATGGATAAATACATTGCAGTGGCGTGCCACGTACCAAAACACCAGCCCTCATTCGAAACCACCCACCGCACTTCTTCCTTGAAATGGCGTTA  >  NC_000913/2785410‑2785689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.