mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 30 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1097372 = | NA (NA) | 6 (0.070) | 6/290 | 11.6 | 6.2% | intergenic (+543/+193) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097531 = | 93 (1.100) | intergenic (+702/+34) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097172 = | NA (NA) | 6 (0.070) | 6/290 | 11.6 | 14.2% | intergenic (+343/+393) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097188 = | 37 (0.440) | intergenic (+359/+377) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096988 = | 113 (1.340) | 6 (0.070) | 6/290 | 11.6 | 5.1% | intergenic (+159/+577) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097191 = | NA (NA) | intergenic (+362/+374) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 4542683 = | 69 (0.820) | 5 (0.060) | 5/278 | 11.9 | 7.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542997 = | 62 (0.780) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4040682 | 90 (1.060) | 17 (0.200) | 5/292 | 12.4 | 15.5% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213161 | 96 (1.150) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | 1733711 = | NA (NA) | 4 (0.050) | 4/272 | 12.4 | NA | intergenic (+8/+43) | lhr/grxD | putative ATP‑dependent helicase/glutaredoxin‑4 |
| ? | NC_000913 | 1733741 = | NA (NA) | intergenic (+38/+13) | lhr/grxD | putative ATP‑dependent helicase/glutaredoxin‑4 | |||||
| * | ? | NC_000913 | 878637 = | 84 (0.990) | 4 (0.050) | 4/276 | 12.6 | 4.7% | intergenic (+6/‑105) | bssR/yliI | repressor of biofilm formation by indole transport regulation/soluble aldose sugar dehydrogenase |
| ? | NC_000913 | 878662 = | 84 (1.070) | intergenic (+31/‑80) | bssR/yliI | repressor of biofilm formation by indole transport regulation/soluble aldose sugar dehydrogenase | |||||
| * | ? | NC_000913 | = 4542691 | 68 (0.800) | 3 (0.040) | 3/278 | 13.5 | 4.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542987 | 62 (0.780) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 3810581 | 88 (1.040) | 3 (0.040) | 3/278 | 13.5 | 3.4% | coding (571/810 nt) | mutM | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
| ? | NC_000913 | = 3810630 | 86 (1.080) | coding (522/810 nt) | mutM | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase | |||||
| * | ? | NC_000913 | 2837463 = | NA (NA) | 3 (0.040) | 3/280 | 13.5 | NA | noncoding (1/27 nt) | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2837490 = | NA (NA) | intergenic (‑67/+86) | hypF/hydN | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit | |||||