| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 878637 = | 84 (0.990) | 4 (0.050) | 4/276 | 12.6 | 4.7% | intergenic (+6/‑105) | bssR/yliI | repressor of biofilm formation by indole transport regulation/soluble aldose sugar dehydrogenase |
| ? | NC_000913 | 878662 = | 84 (1.070) | intergenic (+31/‑80) | bssR/yliI | repressor of biofilm formation by indole transport regulation/soluble aldose sugar dehydrogenase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGAGCGGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/878794‑878637‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctcccccttCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCT > NC_000913/878662‑878807 AGAGCGGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTT > 2:1148075/1‑149 GAGCGGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTC < 1:240650/149‑1 GGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGCGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCCTTCTCCC > 2:267034/1‑149 GGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATAGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGTAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGGGACGCTTTCTCCC > 1:902254/1‑149 GAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCC > 2:883139/1‑149 GAAGAAAGACAAAGAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCC < 2:16102/149‑1 AAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCC < 1:1603/149‑1 AGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCCT < 2:82450/149‑1 GAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGGGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCCTT < 2:99220/149‑1 AAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATC > 1:1307272/1‑149 AGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTGCAATGACTACTCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCc > 2:359724/1‑148 ATGAAGGGGGAGACGCTTTCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCT > 1:442855/1‑149 GGGGGAGACGCTTTCTCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTT < 2:1307272/149‑1 TCCCCCTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCATGAGCCCCTTATTTGTCTTTCTTACGCTCTCTGGGCGG > 2:766088/1‑149 CTTCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCT > 1:847378/1‑149 AGAGCGGAAGAAAGACAAATAAGGGGCACAAGGAAAAAGGATTGTCGATGCATAACGCCTCCGGATTGACTCTGGCTTAAAGCGTAGTCAGTGGAGGAGATAACAAATTCATTTTTACAAAAACTTAAACATGAAGGGGGAGACGCTTTCTCCCCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/878794‑878637‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctcccccttCATGTTTAAGTTTTTGTAAAAATGAATTTGTTATCTCCTCCACTGACTACGCTTTAAGCCAGAGTCAATCCGGAGGCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCT > NC_000913/878662‑878807 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |