New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1048957 =39 (0.870)3 (0.070) 3/268 NT 8.2% coding (376/645 nt) gfcB O‑antigen capsule production lipoprotein
?NC_000913 1048998 = 29 (0.660)coding (335/645 nt) gfcB O‑antigen capsule production lipoprotein

CAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATCCCAGTA  >  NC_000913/1048850‑1049139
                                                                                                                                                    |                                                                                                                                             
ttatcccaggataacggcatgctggttacccacaatggacgtcttttaaaaaccgtcaaacttaataataatctgctggaagtgacaaattccgggcaggaccctctGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCa                                                                                                                                               >  2:146235‑M1/108‑149 (MQ=255)
 aGCACATTGCGACCCGCCATATTCAGCGGCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCag                                                                                                                                              <  1:476050/149‑1 (MQ=255)
 aGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGCACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCag                                                                                                                                              <  1:662461/149‑1 (MQ=255)
 aGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCag                                                                                                                                              <  2:784755/149‑1 (MQ=255)
   tcccgggataacggcatgctggttacccaccatggacgtcttttaaaaaccgtcaaacttaataataatctgctggaagtgacaaattccgggcaggacccgctGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCagag                                                                                                                                            >  2:47503‑M1/105‑149 (MQ=255)
      aTTGCGACCCGCAGTATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGAAACCCTAAAAGGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGt                                                                                                                                         >  1:547372/1‑149 (MQ=255)
           gACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGc                                                                                                                                    <  2:59637/149‑1 (MQ=255)
                 cAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGaa                                                                                                                              >  1:796575/1‑149 (MQ=255)
                    tatTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCACAGGGTCCTGCCCGGAAttt                                                                                                                           >  2:244207/1‑149 (MQ=255)
                       tCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTc                                                                                                                        >  2:417326/1‑149 (MQ=255)
                            gTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTc                                                                                                                   >  1:1454/1‑149 (MQ=255)
                              ctctAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCCGACAGCGGACGAAGGACTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCca                                                                                                                 <  1:782265/149‑1 (MQ=255)
                               tctgagccAGCAAAGGAAAAAGCAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCCCTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCcag                                                                                                                <  2:57313/143‑1 (MQ=255)
                               tctAATCCAGCAAAGGAAAAAGTAGGACTCAGGGTCGCAGAGCGAAAATGGTTGTCTGCACTCCAGAGAATATCGCGCGGCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGCGGGTCCTGCCCGTAATTTGTCACTTCcag                                                                                                                <  1:506504/149‑1 (MQ=255)
                                  aaaccAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCcagcag                                                                                                             <  1:517203/146‑1 (MQ=255)
                                  aaTCCAGCAAAGGAAAAAGTAGAACCCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCcagcag                                                                                                             <  2:330698/149‑1 (MQ=255)
                                   aTCCCGCAAGGGAAAAAGTAGAGCTCTGGGTCGCAGAGCGAAAAGGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGa                                                                                                            <  2:242115/149‑1 (MQ=255)
                                        gCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGattatt                                                                                                       <  1:522934/149‑1 (MQ=255)
                                            aGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGAttattatta                                                                                                   <  2:461858/149‑1 (MQ=255)
                                                aaaaGTAGAACTCAGGGTCGCAGGGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGtt                                                                                               <  2:779197/149‑1 (MQ=255)
                                                    gTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGAc                                                                                           >  1:722293/1‑149 (MQ=255)
                                                             aGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTaa                                                                                  <  1:754371/149‑1 (MQ=255)
                                                               ggTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTaaaa                                                                                >  1:526700/1‑149 (MQ=255)
                                                               ggTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTaaaa                                                                                <  2:1454/149‑1 (MQ=255)
                                                                 tCGCAGAGCGAAAATGGGTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGa                                                                              <  1:31188/149‑1 (MQ=255)
                                                                   gCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTCCGCAGAGGGTCCTGAGCGATGTAGGACGCTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGGCg                                                                            >  1:22760/1‑149 (MQ=255)
                                                                     agagCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTc                                                                          <  2:418158/149‑1 (MQ=255)
                                                                             aaTGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGAGGGTTTTTAAAAGACGTCCATTGTgg                                                                  >  1:540044/1‑149 (MQ=255)
                                                                                         cACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATg                                                      >  2:392663/1‑149 (MQ=255)
                                                                                                      atCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGACGTTATCCTggg                                         >  1:360183/1‑149 (MQ=255)
                                                                                                       ctctgcgtaacgcgctggcaataaaagatggcagccgctggacgcAGCGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATGGTGGGTAACCAGCATGCCGTTATCCCGGGa                                        >  2:47503‑M2/46‑149 (MQ=255)
                                                                                                          tgcgtaacgcgctggcaataaaagatggcagccgctggacgcAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGCCGTTATCCTGGGATaa                                     >  2:146235‑M2/43‑149 (MQ=255)
                                                                                                               aacgcgctggcaataaaagatggcagccgctggacgcAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCAtt                                >  1:90869‑M2/38‑149 (MQ=255)
                                                                                                                           aTCTTTCATTGCCAGCGCGTTACGCAGAGCGTCCTGCCCGAAATGTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTttgttctt                    <  1:417326/149‑1 (MQ=255)
                                                                                                                                ttATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTtgttcttgttct               >  1:513160/1‑149 (MQ=255)
                                                                                                                                        aGCGCGTTACTCAGAGGGTCTTGCCCGGAATTTGGCACTTCCAGCAGATTATTAGTAAGTTTGCCGGTTTTTAAAAGCCGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATcc       <  1:765483/149‑1 (MQ=255)
                                                                                                                                        aGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATcc       <  1:733616/149‑1 (MQ=255)
                                                                                                                                             gTTACGCTGTGGGCCCTGCCCGGAATTTCTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTAGAATGTCCTCTTTCTTTGTTCTTGTTCTATATATCCCAGTa  <  2:371655/149‑1 (MQ=255)
                                                                                                                                             gTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATCCCAGTa  <  1:169989/149‑1 (MQ=255)
                                                                                                                                             cttACGCATATGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGGCCATTGTGGGTAACCAGCATGGCGTTATCCTTGGATAACCATTTGCTTTGTTCTTGTTCTATATATCCCAGTa  <  2:72717/148‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                             
CAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATCCCAGTA  >  NC_000913/1048850‑1049139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.