New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 1048957 = | 39 (0.870) | 3 (0.070) | 3/268 | NT | 8.2% | coding (376/645 nt) | gfcB | O‑antigen capsule production lipoprotein |
? | NC_000913 | 1048998 = | 29 (0.660) | coding (335/645 nt) | gfcB | O‑antigen capsule production lipoprotein |
CAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATCCCAGTA > NC_000913/1048850‑1049139 | ttatcccaggataacggcatgctggttacccacaatggacgtcttttaaaaaccgtcaaacttaataataatctgctggaagtgacaaattccgggcaggaccctctGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCa > 2:146235‑M1/108‑149 (MQ=255) aGCACATTGCGACCCGCCATATTCAGCGGCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCag < 1:476050/149‑1 (MQ=255) aGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGCACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCag < 1:662461/149‑1 (MQ=255) aGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCag < 2:784755/149‑1 (MQ=255) tcccgggataacggcatgctggttacccaccatggacgtcttttaaaaaccgtcaaacttaataataatctgctggaagtgacaaattccgggcaggacccgctGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCagag > 2:47503‑M1/105‑149 (MQ=255) aTTGCGACCCGCAGTATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGAAACCCTAAAAGGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGt > 1:547372/1‑149 (MQ=255) gACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGc < 2:59637/149‑1 (MQ=255) cAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGaa > 1:796575/1‑149 (MQ=255) tatTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCACAGGGTCCTGCCCGGAAttt > 2:244207/1‑149 (MQ=255) tCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTc > 2:417326/1‑149 (MQ=255) gTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTc > 1:1454/1‑149 (MQ=255) ctctAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCCGACAGCGGACGAAGGACTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCca < 1:782265/149‑1 (MQ=255) tctgagccAGCAAAGGAAAAAGCAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCCCTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCcag < 2:57313/143‑1 (MQ=255) tctAATCCAGCAAAGGAAAAAGTAGGACTCAGGGTCGCAGAGCGAAAATGGTTGTCTGCACTCCAGAGAATATCGCGCGGCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGCGGGTCCTGCCCGTAATTTGTCACTTCcag < 1:506504/149‑1 (MQ=255) aaaccAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCcagcag < 1:517203/146‑1 (MQ=255) aaTCCAGCAAAGGAAAAAGTAGAACCCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCcagcag < 2:330698/149‑1 (MQ=255) aTCCCGCAAGGGAAAAAGTAGAGCTCTGGGTCGCAGAGCGAAAAGGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGa < 2:242115/149‑1 (MQ=255) gCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGattatt < 1:522934/149‑1 (MQ=255) aGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGAttattatta < 2:461858/149‑1 (MQ=255) aaaaGTAGAACTCAGGGTCGCAGGGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGtt < 2:779197/149‑1 (MQ=255) gTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGAc > 1:722293/1‑149 (MQ=255) aGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTaa < 1:754371/149‑1 (MQ=255) ggTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTaaaa > 1:526700/1‑149 (MQ=255) ggTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTaaaa < 2:1454/149‑1 (MQ=255) tCGCAGAGCGAAAATGGGTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGa < 1:31188/149‑1 (MQ=255) gCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTCCGCAGAGGGTCCTGAGCGATGTAGGACGCTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGGCg > 1:22760/1‑149 (MQ=255) agagCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTc < 2:418158/149‑1 (MQ=255) aaTGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGAGGGTTTTTAAAAGACGTCCATTGTgg > 1:540044/1‑149 (MQ=255) cACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATg > 2:392663/1‑149 (MQ=255) atCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGACGTTATCCTggg > 1:360183/1‑149 (MQ=255) ctctgcgtaacgcgctggcaataaaagatggcagccgctggacgcAGCGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATGGTGGGTAACCAGCATGCCGTTATCCCGGGa > 2:47503‑M2/46‑149 (MQ=255) tgcgtaacgcgctggcaataaaagatggcagccgctggacgcAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGCCGTTATCCTGGGATaa > 2:146235‑M2/43‑149 (MQ=255) aacgcgctggcaataaaagatggcagccgctggacgcAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCAtt > 1:90869‑M2/38‑149 (MQ=255) aTCTTTCATTGCCAGCGCGTTACGCAGAGCGTCCTGCCCGAAATGTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTttgttctt < 1:417326/149‑1 (MQ=255) ttATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTtgttcttgttct > 1:513160/1‑149 (MQ=255) aGCGCGTTACTCAGAGGGTCTTGCCCGGAATTTGGCACTTCCAGCAGATTATTAGTAAGTTTGCCGGTTTTTAAAAGCCGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATcc < 1:765483/149‑1 (MQ=255) aGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATcc < 1:733616/149‑1 (MQ=255) gTTACGCTGTGGGCCCTGCCCGGAATTTCTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTAGAATGTCCTCTTTCTTTGTTCTTGTTCTATATATCCCAGTa < 2:371655/149‑1 (MQ=255) gTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATCCCAGTa < 1:169989/149‑1 (MQ=255) cttACGCATATGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGGCCATTGTGGGTAACCAGCATGGCGTTATCCTTGGATAACCATTTGCTTTGTTCTTGTTCTATATATCCCAGTa < 2:72717/148‑1 (MQ=255) | CAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGGATAACCATTTGCTTTGTTCTTGTTCTATATATCCCAGTA > NC_000913/1048850‑1049139 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |