New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1048957 =	39 (0.870)	3 (0.070)	3/268	NT	8.2%	coding (376/645 nt)	gfcB	O‑antigen capsule production lipoprotein
	?	NC_000913	1048998 =	29 (0.660)					coding (335/645 nt)	gfcB	O‑antigen capsule production lipoprotein

TCTGGCCGCGTGGAAGTCACCTCTTCCTGCCAGACATTACACAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGG  >  NC_000913/1048809‑1049100                                                                                                                                                     |                                                                                                                                                tCTGGCCGCGTGGAAGTCCCCTCTTCCTGCCAGACATTACACAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGGCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATcgcg                                                                                                                                                 <  1:234970/149‑1 (MQ=255)         cgTGGAAGTCACCTCTTCCTGCCAGACATTACACAGCACATTGCGCCCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGc                                                                                                                                         <  1:163591/149‑1 (MQ=255)                 tCACCTCTTCCTGCCAGACATTACACAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGGGCGGCCAGCGGCTGCCa                                                                                                                                 >  1:237062/1‑149 (MQ=255)                   aCCTCTTCCTGCCAGACACTACACAGCACATTGCGACCCGCAATCTTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATc                                                                                                                               <  2:245663/149‑1 (MQ=255)                           cTGCCAGACATTACACAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCGGCGGCTGCCATCTTTTATTg                                                                                                                       >  2:454748/1‑149 (MQ=255)                             gCCAGACATTACACAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGcc                                                                                                                     >  2:34906/1‑149 (MQ=255)                             gCCAGACATTACACAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGAGAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATCGcc                                                                                                                     >  2:642285/1‑149 (MQ=255)                                 gACATTACACAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCAAACAAAGTGTTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCGTTTATTGCCAgcg                                                                                                                 >  1:383007/1‑149 (MQ=255)                                  aCATTCCACATCCCATTGCCACCCGCAATATTCAGCGGCTCTAATACAGCAAAGGAAAAAGTAGAACTCACGGTCGCAGAGCGAAAATGGTTGTCCTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAgcgc                                                                                                                <  1:143626/149‑1 (MQ=255)                                  aCATTACACAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCCGCGGCTGCCATCTTTTATTGCCAgcgc                                                                                                                >  2:59432/1‑149 (MQ=255)                                  aCATTACACAGCACATTGCGACCCGAAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCTCGCGTCCAGCGGCTGCCATCTTTTATTGCCAgcgc                                                                                                                >  1:445652/1‑149 (MQ=255)                                  aCAATACACAGCACCTTGCGACCCGACATATTCCGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGTTCGCAGAGCGAAAATGGTTGGCTTCACTCCAGAGACTATCGCGCGTCCAGCGGCTGCCATCTTTGCTGGCCAgcgc                                                                                                                >  2:73324/1‑149 (MQ=255)                                     aatggttatcccaggataacgccatgctggttacccacaatggacgtcttttaaaaaccgtcaaacttaataataatctgctggaagtgacaaattccgggcaggaccctctGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGtt                                                                                                             >  1:90869‑M1/113‑149 (MQ=255)                                         acaGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAAAATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGATACGc                                                                                                         >  2:168579/1‑149 (MQ=255)                                          ttatcccaggataacggcatgctggttacccacaatggacgtcttttaaaaaccgtcaaacttaataataatctgctggaagtgacaaattccgggcaggaccctctGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCa                                                                                                        >  2:146235‑M1/108‑149 (MQ=255)                                           aGCACATTGCGACCCGCCATATTCAGCGGCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCag                                                                                                       <  1:476050/149‑1 (MQ=255)                                           aGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGCACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCag                                                                                                       <  1:662461/149‑1 (MQ=255)                                           aGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCag                                                                                                       <  2:784755/149‑1 (MQ=255)                                             tcccgggataacggcatgctggttacccaccatggacgtcttttaaaaaccgtcaaacttaataataatctgctggaagtgacaaattccgggcaggacccgctGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCagag                                                                                                     >  2:47503‑M1/105‑149 (MQ=255)                                                aTTGCGACCCGCAGTATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGAAACCCTAAAAGGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGt                                                                                                  >  1:547372/1‑149 (MQ=255)                                                     gACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGc                                                                                             <  2:59637/149‑1 (MQ=255)                                                           cAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGaa                                                                                       >  1:796575/1‑149 (MQ=255)                                                              tatTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCACAGGGTCCTGCCCGGAAttt                                                                                    >  2:244207/1‑149 (MQ=255)                                                                 tCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTc                                                                                 >  2:417326/1‑149 (MQ=255)                                                                      gTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTc                                                                            >  1:1454/1‑149 (MQ=255)                                                                        ctctAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCCGACAGCGGACGAAGGACTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCca                                                                          <  1:782265/149‑1 (MQ=255)                                                                         tctgagccAGCAAAGGAAAAAGCAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCCCTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCcag                                                                         <  2:57313/143‑1 (MQ=255)                                                                         tctAATCCAGCAAAGGAAAAAGTAGGACTCAGGGTCGCAGAGCGAAAATGGTTGTCTGCACTCCAGAGAATATCGCGCGGCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGCGGGTCCTGCCCGTAATTTGTCACTTCcag                                                                         <  1:506504/149‑1 (MQ=255)                                                                            aaaccAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCcagcag                                                                      <  1:517203/146‑1 (MQ=255)                                                                            aaTCCAGCAAAGGAAAAAGTAGAACCCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCcagcag                                                                      <  2:330698/149‑1 (MQ=255)                                                                             aTCCCGCAAGGGAAAAAGTAGAGCTCTGGGTCGCAGAGCGAAAAGGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGa                                                                     <  2:242115/149‑1 (MQ=255)                                                                                  gCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGattatt                                                                <  1:522934/149‑1 (MQ=255)                                                                                      aGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGAttattatta                                                            <  2:461858/149‑1 (MQ=255)                                                                                          aaaaGTAGAACTCAGGGTCGCAGGGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGtt                                                        <  2:779197/149‑1 (MQ=255)                                                                                              gTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGAc                                                    >  1:722293/1‑149 (MQ=255)                                                                                                       aGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTaa                                           <  1:754371/149‑1 (MQ=255)                                                                                                         ggTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTaaaa                                         >  1:526700/1‑149 (MQ=255)                                                                                                         ggTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTaaaa                                         <  2:1454/149‑1 (MQ=255)                                                                                                           tCGCAGAGCGAAAATGGGTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGa                                       <  1:31188/149‑1 (MQ=255)                                                                                                             gCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTCCGCAGAGGGTCCTGAGCGATGTAGGACGCTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGGCg                                     >  1:22760/1‑149 (MQ=255)                                                                                                               agagCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTc                                   <  2:418158/149‑1 (MQ=255)                                                                                                                       aaTGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGAGGGTTTTTAAAAGACGTCCATTGTgg                           >  1:540044/1‑149 (MQ=255)                                                                                                                                   cACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATg               >  2:392663/1‑149 (MQ=255)                                                                                                                                                atCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGACGTTATCCTggg  >  1:360183/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                TCTGGCCGCGTGGAAGTCACCTCTTCCTGCCAGACATTACACAGCACATTGCGACCCGCAATATTCAGCGTCTCTAATCCAGCAAAGGAAAAAGTAGAACTCAGGGTCGCAGAGCGAAAATGGTTGTCTTCACTCCAGAGAATATCGCGCGTCCAGCGGCTGCCATCTTTTATTGCCAGCGCGTTACGCAGAGGGTCCTGCCCGGAATTTGTCACTTCCAGCAGATTATTATTAAGTTTGACGGTTTTTAAAAGACGTCCATTGTGGGTAACCAGCATGGCGTTATCCTGGG  >  NC_000913/1048809‑1049100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.