| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2291205 | 48 (1.240) | 3 (0.080) | 3/270 | 5.3 | 7.2% | noncoding (55/199 nt) | RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site |
| ? | NC_000913 | 2538613 = | 32 (0.870) | noncoding (81/98 nt) | RIP174 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP174 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCGCAGATGATCGCC > NC_000913/2538473‑2538754 | gAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGACCTACAAAATCGTGCTAATTCCATATATTGCAGAAACCTTTTAGGCCTGATAAg > 2:572744/1‑143 (MQ=255) aTTAACTGCTGCATGTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTa < 1:103634/143‑1 (MQ=255) aTTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAACTGCGACAAGGTTGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTa < 2:489568/143‑1 (MQ=25) tACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCACAACGCAt > 1:374111/1‑143 (MQ=255) tGCATTTGTCGGCAGCAAGAACTGTTAAAAAGGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAg < 1:208972/143‑1 (MQ=255) tGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGtt < 2:567095/143‑1 (MQ=255) tCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGtttt < 2:66685/143‑1 (MQ=255) ggCAGCAACAGCTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGc < 1:481049/143‑1 (MQ=255) aacaacTGTTAAAAGAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGt < 1:308443/143‑1 (MQ=255) gTTAACAACGTGTGCTTTGTTCATGCCGGATGCGGCGTAAACGCTTTGTCCGGCCAACAAAAGCACGTAAATTCAATATATTGCTGAACTAACGTAGGCCTGATCAGCGTAGCGCATCCGGCACTTTTCCgcctctatcactt > 2:186908/1‑131 (MQ=21) tgaccaaGTGCGCGTTGTACACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAATCGTGCTAATTCAATATATTGTGGGCTCCACGTAGGCCTAATAAGCGAAGCACATTAGGAAGTTATGCTCTTGtacgcgctct > 2:631716/6‑134 (MQ=21) aaaaaaGTGCGCGTGGTTGAGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGtctc < 2:325647/143‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAACATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTAt > 1:207241/1‑143 (MQ=255) tGCCGGATGCGGCGTAAACGCCTTATCCGGCCGACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCGGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTaaa < 2:278292/143‑1 (MQ=255) ggtGCGGCTTAGACGCCGTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATcccc < 1:9421/141‑1 (MQ=255) gatacgccatAAATGCCTTGTCCGGCCTACAGAACCGTCCTAGTTCCATATATTGCATGAAGCTTGTATGCCGTATAAGCGTAGCGCATTAGGCAATATTGAGTAAGTTTACCATCTGCGATGCTATTAATCCTTAAATcccc < 1:49784/134‑1 (MQ=255) tgtggcgTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTATGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGc < 1:256970/140‑1 (MQ=255) cgTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCAGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCCTCAGTCTCCGATGCTATTCATCCTTCAATCCCCCCCCCCt > 1:442059/1‑143 (MQ=21) agtatgcGCCTTATCCGGCTTACAAAATCGTGCTAATTCAATTGATTGCAGAAACTTTGTGGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCCGATGCTATTAATCCTTACATCCCTGCCCCCt < 1:145851/137‑1 (MQ=21) gTAAACGCCTTATCCGGCCTACAAAATCGTTCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATCCTAATATTCCTTAAATCCCCGCCCCCTg < 1:590280/143‑1 (MQ=255) tAAACGCCTTGTCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTgg < 2:400362/143‑1 (MQ=255) tAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTCGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTgg < 1:493731/143‑1 (MQ=255) ccTTATCCGGCCTACAAAATCGTGCGAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTaaaa < 1:671557/143‑1 (MQ=255) tCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTaatcgtctc > 2:432719/1‑136 (MQ=255) tCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGctc > 1:413314/1‑143 (MQ=255) tCCGGCCTACAAAATCGTGCTAAGTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGctc > 1:83701/1‑143 (MQ=255) gctaatgtattctgttGCAGGACCCGTGTAGGCCTGACAAGCGTAGCGCATCAGGCTGTTTTGCGGTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGt < 2:467058/129‑1 (MQ=37) tatatTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAg > 2:559933/1‑143 (MQ=255) gCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCACACACCCCGGCCGAAAGGTAGCGATCg > 1:630089/1‑143 (MQ=255) cAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTACTCCTTCAATCCCCGCCCCCTGGCTAGAATGCTCTTCCCCAAACACCCCGGTAGCAAGGAACCGATCGc > 2:143384/1‑143 (MQ=37) ccTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGAt < 2:241058/143‑1 (MQ=255) ttGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCg > 2:537168/1‑143 (MQ=255) ccTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAAGGCTCTTCCCCAAACCCCCCGGGAGAAACGTAGCGATCGCCACGACCGCAgctga > 1:31976/1‑143 (MQ=38) aTAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGCTAGCCACGATCGCAGACGATCGc > 1:318570/1‑143 (MQ=255) tAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAACCACCCCGGTAGAAAGGCAGCGATCGCCACGATCGCAGATGACCGcc > 2:313450/1‑143 (MQ=255) tAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCACGGTAGTAAGGTAGCGATCGCCACGATCGCAGATGATCGcc < 2:185672/143‑1 (MQ=255) | GAAAATTAAATACTGCATTTGTCGGCAGCAACAACTGTTAAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCAGAAACCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGATGCTATTAATCCTTAAATCCCCGCCCCCTGGCTAAAATGCTCTTCCCCAAACACCCCGGTAGAAAGGTAGCGATCGCCACGATCGCAGATGATCGCC > NC_000913/2538473‑2538754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |