New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2291205	48 (1.240)	3 (0.080)	3/270	5.3	7.2%	noncoding (55/199 nt)	RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site	RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site
	?	NC_000913	2538613 =	32 (0.870)					noncoding (81/98 nt)	RIP174 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site	RIP174 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGG  >  NC_000913/2291075‑2291347                                                                                                                                   |                                                                                                                                               tgcGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTa                                                                                                                                    <  1:554837/143‑1 (MQ=255)  gcGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTAt                                                                                                                                   <  1:382593/143‑1 (MQ=255)   cGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCACCCGTCTGAGATTTATGACAACCGCACAACTGCCTGATGCGCTACGCtgctc                                                                                                                                  >  2:215746/1‑139 (MQ=255)      aaacacgacgTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCTCGATGGATTTATCATCGTGCTGAGATTTAAAAAAAAAAAAAAACTGCCTGATGCGCTACGCTTATCAgg                                                                                                                               <  1:252575/134‑1 (MQ=255)          tCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa                                                                                                                           >  2:508459/1‑143 (MQ=255)          tCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa                                                                                                                           >  2:299796/1‑143 (MQ=255)                  cGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGGTTTATGACCAGCGCAAGACTGCCTGATGCGCTACGCTTATCAGGCCTAAGTGgatc                                                                                                                   >  2:34510/1‑143 (MQ=38)                   gCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGAAGCGCTACGCTTAACAGGCCTACGTgcctcg                                                                                                                  >  1:405571/1‑138 (MQ=255)                     tCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGTGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGgatcgat                                                                                                                <  2:140574/143‑1 (MQ=255)                      cACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAAATACCTGATGCGCTACGCTTATCAGGCCTACGTGgatcgatc                                                                                                               >  2:60738/1‑143 (MQ=255)                       aCGCGTGGCGGCCACCATTCTGTTCCTGCAACAACTCGTGGCACAAGAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCa                                                                                                              >  2:675012/1‑143 (MQ=255)                              gcggcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTAtt                                                                                                       >  2:556630/1‑143 (MQ=255)                               cggcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTCTTg                                                                                                      >  1:31246/1‑143 (MQ=255)                                ggcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGa                                                                                                     >  1:360937/1‑143 (MQ=255)                                 gcCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGaa                                                                                                    >  2:498657/1‑143 (MQ=255)                                  cctccaTGCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAAt                                                                                                   <  1:196795/140‑1 (MQ=255)                                     ccaTTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTCCCTGATGCGCTACGCTTATCCGGCCTACGTGGATCGATCAATTTATTGAATTTa                                                                                                <  2:350216/143‑1 (MQ=255)                                            gTTCTTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAAtt                                                                                         <  2:536936/143‑1 (MQ=255)                                              tCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAAtttt                                                                                       >  2:315388/1‑143 (MQ=255)                                                cTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCCATCAATTTATTGAATTTACCCAAATTTGt                                                                                     >  1:25795/1‑143 (MQ=255)                                                 tGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCACTTAATGCAATTTACACAATTTTGTa                                                                                    >  1:262450/1‑143 (MQ=255)                                                      caacGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCg                                                                               >  2:585608/1‑143 (MQ=255)                                                        gcgcgGGGCAGAGTAAAAATAGCCCGATGGAGTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGa                                                                             <  2:69360/142‑1 (MQ=255)                                                          gcgGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATa                                                                           >  2:511057/1‑143 (MQ=255)                                                            ggggCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAg                                                                         >  1:224072/1‑143 (MQ=255)                                                               gCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGTTGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCg                                                                      >  2:613775/1‑143 (MQ=255)                                                               gCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGCATTTACACCATTTTGTAGGCCGGATAAGGCg                                                                      >  1:593452/1‑143 (MQ=255)                                                                 acaATAAAAATAGCACGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAGTTTATTGAATTTACACAATTTTGTAGGCCGGACAGGGCGtt                                                                    >  2:87797/1‑143 (MQ=255)                                                                    aTAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCAc                                                                 >  1:126337/1‑143 (MQ=255)                                                                           tAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACCATTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                                          >  2:223626/1‑143 (MQ=255)                                                                           tAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                                          <  1:585756/143‑1 (MQ=255)                                                                           gaGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt                                                          <  1:212412/142‑1 (MQ=255)                                                                              cccgatgataaatccatcGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCg                                                       >  2:552352/15‑143 (MQ=255)                                                                              cccGATGCATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCg                                                       <  1:56168/143‑1 (MQ=255)                                                                               ccGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCCTCCgg                                                      >  1:423968/1‑143 (MQ=255)                                                                                cGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                     <  1:533564/143‑1 (MQ=25)                                                                                cGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCCGc                                                     >  1:556610/1‑143 (MQ=255)                                                                                 gATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                    >  2:342445/1‑143 (MQ=255)                                                                                 gATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGACCAATTTATTGAATTTACACAATTTTGTCGGCCGGATACGTCGTTCCCGCCCCCTCCGGcc                                                    >  2:310267/1‑142 (MQ=21)                                                                                                gggCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATaaaaccaacgcaag                                     >  1:357059/1‑132 (MQ=255)                                                                                                        aTTTATGACAAACGCAACACGGCCTCATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAAGTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAAc                             <  1:394028/143‑1 (MQ=255)                                                                                                            aTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTc                         <  1:556630/143‑1 (MQ=255)                                                                                                              gACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTa                       <  1:675012/143‑1 (MQ=255)                                                                                                               aCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAg                      <  2:44366/143‑1 (MQ=255)                                                                                                                 aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAATAGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAAATAAGCGCACTTCGTCAACAGTCTAGcc                    >  1:4560/1‑143 (MQ=255)                                                                                                                     gCAAACCTGCCTGACGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGAt                <  2:83457/143‑1 (MQ=255)                                                                                                                               cTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATGTTGTAGGCCGGATAAGGCGTTCACGCCGCAACCGACATAGACTAAGCGCACTTTGTCACCCGTCTAGCCCGATGGCATccccg      >  2:599105/1‑142 (MQ=21)                                                                                                                                   tGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATACGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCgg  <  1:299796/143‑1 (MQ=255)                                                                                                                                   |                                                                                                                                               TGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGG  >  NC_000913/2291075‑2291347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.