| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,312 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909312 | 3910085 | 774 | 33 [0] | [0] 32 | [pstA]–[pstC] | [pstA],[pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909311 | 0 (0.000) | 32 (0.680) | 29/270 | 0.7 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910086 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
TGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGC > NC_000913/3909954‑3910209 | tcgctacccgccggggcgttcgccagacctccaccctccgtatggggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCtca < 2:18522‑M2/11‑1 (MQ=255) tacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaagccagatcagccagGCGCAAGctcagtcg > 1:709390‑M2/129‑142 (MQ=255) gccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAAc > 1:136225‑M2/124‑143 (MQ=255) ccagggcgttcgccagcccaccaccttccgtatcgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACa < 2:571108‑M2/21‑1 (MQ=255) agcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtagataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGc > 1:177989‑M2/119‑143 (MQ=255) cgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGa < 1:749181‑M2/27‑1 (MQ=255) cagcccaccatcctccgtattgggcggcggcgtcacggcagtgaacagcgccagcgacctaccgtcgataccgcgagtgatcgtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGACGATACCGaa < 2:448651‑M2/34‑1 (MQ=255) cagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAggg > 2:62032‑M2/110‑133 (MQ=255) cagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAggg < 1:62032‑M2/24‑1 (MQ=255) cagcaccgccttccgtatggggcggcgccgccacttcagtgaacagcgccagcgacatcccgtggataccgcgagtgatggtggacattaaaatccatatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGacac < 1:366892‑M2/36‑1 (MQ=255) cttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGa > 1:536161‑M2/99‑143 (MQ=255) tattgcgcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgattgtgtacattataatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGa < 1:447853‑M2/51‑1 (MQ=255) gagtgggcggcgacggaagttcagtgaacggcgccagcgacataccgtcgacaccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGa < 1:878495‑M2/51‑1 (MQ=255) cggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATcagcag > 1:297526‑M2/86‑143 (MQ=255) gcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAgcg < 1:721482‑M2/60‑1 (MQ=255) tcagtggactgcgccagagagatagggtcgataccgagagtgattgtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGaa < 2:318403‑M2/71‑1 (MQ=255) gtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATGAGCAGCGCGACAAACGAAGTc > 2:786944‑M2/70‑143 (MQ=255) aacagcgccagcgacatacggtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCAcc < 1:495887‑M2/77‑1 (MQ=255) gcacgccagcgccttagcgtcgctaccgggggtgatggtggacattaaaatccagatcagccagGCGCAAGGTCAGTCAGGAACAGGGCTATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCaa < 2:762033‑M2/79‑1 (MQ=255) gcgccagcgacagaccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACg < 2:34100‑M2/81‑1 (MQ=255) cagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTAcc > 1:831780‑M2/59‑143 (MQ=255) aagcgacataccgtcgatacagcgagggatggtggacagtaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTAcc < 1:810648‑M2/85‑1 (MQ=255) cgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACGGGGACGGCGATCAGCGGCGAGACAAAAGAAGACACCAACGTACGGTa > 2:366751‑M2/56‑143 (MQ=255) ataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACCGGTCGGTACCGAAACTCACCGGGACGACGATCAGCAGAGGGCTCAACGACGTCACCAACGTACCGTagagc > 1:563231‑M2/52‑141 (MQ=255) gaccgtcgagaccgcgagtgatggtggacaagaaaatcgagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCg < 1:294649‑M2/93‑1 (MQ=255) tcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGAGCGGCAcc > 1:542569‑M2/46‑143 (MQ=255) ataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAgc > 1:534311‑M2/43‑143 (MQ=255) ataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAACAGCGCGACAAACGAAGTCACCAACGTACGCTAGCTCGGCACCAgc > 2:416693‑M2/43‑143 (MQ=255) gtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCg > 2:719445‑M2/28‑143 (MQ=255) gtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGACAAACGCAGTCACCAACGTACCGTAGCTCGGCACCAGCGCCCCGGAGATATCg > 2:719451‑M2/28‑143 (MQ=255) attaaactccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAGCTCACCGAGCAGGCTGTGTTCAGCGCGAGAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGt < 1:903679‑M2/122‑1 (MQ=255) taaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGACACCAGCGCCCCGTAGCTATCGTGCGgcgc > 1:587969‑M2/20‑143 (MQ=255) | TGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGC > NC_000913/3909954‑3910209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |