| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,312 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909312 | 3910085 | 774 | 33 [0] | [0] 32 | [pstA]–[pstC] | [pstA],[pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909311 | 0 (0.000) | 32 (0.680) | 29/270 | 0.7 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910086 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
AAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAG > NC_000913/3909169‑3909435 | aaaTTGCCAGCCCGCTACCCGCCAGAGCGTTCGCCGTACCGCCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAG < 2:523432‑M1/143‑1 (MQ=255) tcgCTACCCGCCGGGGCGTTCGCCAGACCTCCACCCTCCGTATGGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctca < 2:18522‑M1/142‑12 (MQ=255) tACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAAGCCAGATCAGCCAGgcgcaagctcagtcg > 1:709390‑M1/1‑128 (MQ=255) gCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaac > 1:136225‑M1/1‑123 (MQ=255) ccAGGGCGTTCGCCAGCCCACCACCTTCCGTATCGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaaca < 2:571108‑M1/143‑22 (MQ=255) agCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTAGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggc > 1:177989‑M1/1‑118 (MQ=255) cGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcga < 1:749181‑M1/143‑28 (MQ=255) cAGCCCACCATCCTCCGTATTGGGCGGCGGCGTCACGGCAGTGAACAGCGCCAGCGACCTACCGTCGATACCGCGAGTGATCGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacaggacgataccgaa < 2:448651‑M1/143‑35 (MQ=255) cAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacaggg > 2:62032‑M1/1‑109 (MQ=255) cAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacaggg < 1:62032‑M1/133‑25 (MQ=255) cagcaccgccttcCGTATGGGGCGGCGCCGCCACTTCAGTGAACAGCGCCAGCGACATCCCGTGGATACCGCGAGTGATGGTGGACATTAAAATCCATATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgacac < 1:366892‑M1/140‑37 (MQ=255) cTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccggga > 1:536161‑M1/1‑98 (MQ=255) tATTGCGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATTGTGTACATTATAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcga < 1:447853‑M1/143‑52 (MQ=255) gagtgggCGGCGACGGAAGTTCAGTGAACGGCGCCAGCGACATACCGTCGACACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcga < 1:878495‑M1/140‑52 (MQ=255) cggcggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcag > 1:297526‑M1/1‑85 (MQ=255) gcggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcg < 1:721482‑M1/143‑61 (MQ=255) tCAGTGGACTGCGCCAGAGAGATAGGGTCGATACCGAGAGTGATTGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaa < 2:318403‑M1/143‑72 (MQ=255) gTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatgagcagcgcgacaaacgaagtc > 2:786944‑M1/1‑69 (MQ=255) aaCAGCGCCAGCGACATACGGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcacc < 1:495887‑M1/143‑78 (MQ=255) gcacgccagCGCCTTAGCGTCGCTACCGGGGGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaaggtcagtcaggaacagggctataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaa < 2:762033‑M1/140‑80 (MQ=255) gcgcCAGCGACAGACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacg < 2:34100‑M1/143‑82 (MQ=255) cAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtacc > 1:831780‑M1/1‑58 (MQ=255) aagCGACATACCGTCGATACAGCGAGGGATGGTGGACAGTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtacc < 1:810648‑M1/142‑86 (MQ=255) cGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcacggggacggcgatcagcggcgagacaaaagaagacaccaacgtacggta > 2:366751‑M1/1‑55 (MQ=255) aTACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaaccggtcggtaccgaaactcaccgggacgacgatcagcagagggctcaacgacgtcaccaacgtaccgtagagc > 1:563231‑M1/1‑51 (MQ=255) gacCGTCGAGACCGCGAGTGATGGTGGACAAGAAAATCGAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcg < 1:294649‑M1/142‑94 (MQ=255) tCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagagcggcacc > 1:542569‑M1/1‑45 (MQ=255) aTACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagc > 1:534311‑M1/1‑42 (MQ=255) aTACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcaacagcgcgacaaacgaagtcaccaacgtacgctagctcggcaccagc > 2:416693‑M1/1‑42 (MQ=255) gtggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcg > 2:719445‑M1/1‑27 (MQ=255) gtggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgacaaacgcagtcaccaacgtaccgtagctcggcaccagcgccccggagatatcg > 2:719451‑M1/1‑27 (MQ=255) aTTAAACTCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaagctcaccgagcaggctgtgttcagcgcgagaaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggt < 1:903679‑M1/143‑123 (MQ=255) tAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcgacaccagcgccccgtagctatcgtgcggcgc > 1:587969‑M1/1‑19 (MQ=255) | AAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAG > NC_000913/3909169‑3909435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |