New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4179656	40 (0.990)	3 (0.080)	3/272	6.1	8.4%	intergenic (+73/‑340)	rplA/rplJ	50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
	?	NC_000913	= 4179766	27 (0.690)					intergenic (+183/‑230)	rplA/rplJ	50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTG  >  NC_000913/4179625‑4179908                                                                                                                                              |                                                                                                                                               cACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGAc                                                                                                                                               <  1:307255/143‑1 (MQ=255)        caTGCTTAATGCCGACGTATATCCGAGATATTCGGGTGGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGa                                                                                                                                        <  1:54945/142‑1 (MQ=255)        aaTGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGa                                                                                                                                        <  1:218346/143‑1 (MQ=255)              gactGCCGAGGTATCTCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGAt                                                                                                                                  <  2:146617/140‑1 (MQ=255)                       ctgatagCCGTGTTATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGtt                                                                                                                         <  2:79170/140‑1 (MQ=255)                              ccGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGCGAGTCGCCAGGAACATAGCTAACTATGTGACCGGTGCGAATGCAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGCTTTGTTCGTTGGAGCCt                                                                                                                  >  1:310515/1‑143 (MQ=255)                               cGAGATATTCGGGTTGTGGCAAGGCGGCAACGGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACGGGCGCGTCGCAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGGTGTGGTCGTTGGAGCCTg                                                                                                                 >  2:398342/1‑143 (MQ=255)                                 agaTATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGc                                                                                                               >  1:618371/1‑143 (MQ=255)                                       tCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGCAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGAGAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATcc                                                                                                         >  1:251243/1‑143 (MQ=255)                                         gggTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAg                                                                                                       >  1:349906/1‑143 (MQ=255)                                         gggTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAg                                                                                                       <  1:403700/143‑1 (MQ=255)                                           gTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGc                                                                                                     >  2:653197/1‑143 (MQ=255)                                                 gCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGt                                                                                               <  1:697325/143‑1 (MQ=255)                                                     ggcggcAACTGAGGGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGaa                                                                                           <  2:506479/143‑1 (MQ=255)                                                           aaCTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGAAAGCCACCGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGc                                                                                     <  2:673254/143‑1 (MQ=255)                                                                   gagtCGCCAGGAGCATAGCTAACTATGTGAGGGGTGCGAATGAGGGAAGCCAAGGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGttt                                                                             <  2:624780/143‑1 (MQ=255)                                                                     gtCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCg                                                                           >  1:331011/1‑143 (MQ=255)                                                                      tCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGc                                                                          >  2:97612/1‑143 (MQ=255)                                                                         ccAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAg                                                                       >  2:695731/1‑143 (MQ=255)                                                                                              tgACTGGTGCGAATGAAGGAAGCCAACGCCGTTCCAAGGTCAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGa                                                  <  1:305277/143‑1 (MQ=255)                                                                                                  tGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGGt                                              <  1:653197/143‑1 (MQ=255)                                                                                                          aTGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGGTGACAGAAc                                      <  1:493648/143‑1 (MQ=255)                                                                                                              aggaagCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGGTGACAGAACGCTa                                  >  2:200369/1‑143 (MQ=255)                                                                                                                      aaCGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGGTGAACGAACGCTAAGagtatt                          >  1:146058/1‑143 (MQ=255)                                                                                                                         gCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGGTGACAGAACGCTCAGATTATTCtt                       <  2:298825/143‑1 (MQ=255)                                                                                                                            gTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTta                    <  1:500553/143‑1 (MQ=255)                                                                                                                                              aCGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTTGCAAGAAACTTAATCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTg  <  2:109190/143‑1 (MQ=255)                                                                                                                                              aCGGATAGAAAAGAGTGGTGCGTTGGAGCCTGGCCTATCCAGGCCGCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCGGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTg  <  1:186318/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                               CACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTG  >  NC_000913/4179625‑4179908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.