New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 417965640 (0.990)3 (0.080) 3/272 6.1 8.4% intergenic (+73/‑340) rplA/rplJ 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
?NC_000913 = 4179766 27 (0.690)intergenic (+183/‑230) rplA/rplJ 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCTCCACCACCATGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTG  >  NC_000913/4179518‑4179797
                                                                                                                                          |                                                                                                                                             
aTCTCCACCACCATGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATCTCCGAGat                                                                                                                                           >  2:305277/1‑143 (MQ=255)
 tctcCACCACCATGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGata                                                                                                                                          >  2:307255/1‑143 (MQ=255)
     caccaccaTGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTGAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTAGATCCGAGATGTTCg                                                                                                                                      >  1:595860/1‑143 (MQ=255)
      accaccaTGGTGGCAGGGGTTGCAGTTGACCAGGCGGGCCTGAGCGCTTCTGGAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCgg                                                                                                                                     <  2:588118/143‑1 (MQ=255)
             tGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTgg                                                                                                                              <  1:543718/143‑1 (MQ=255)
                  gCAGGCGTTGCAGTTGACCAGTCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGCCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAgg                                                                                                                         <  1:268061/143‑1 (MQ=255)
                    aGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAggcg                                                                                                                       <  1:179044/143‑1 (MQ=255)
                      gtgtTGCAGTTGACCAGGCTGGCCTGAGCGCTTCGGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAggcggc                                                                                                                     <  2:345606/143‑1 (MQ=255)
                      gggtTGCAGTTGACCAGGCTGGCCTGAGCGCTTCGGTAAACTAAGGCCTTTACGTGGGCGGTGATTTTGTCTACAAGCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAggcggc                                                                                                                     <  2:264768/141‑1 (MQ=255)
                         ttGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAAc                                                                                                                  >  1:673254/1‑143 (MQ=255)
                          tGCAGTTGACCAGGCTGGCCTGAGCGCTGCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACt                                                                                                                 <  1:62745/143‑1 (MQ=255)
                               ttGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATAACCGGGGTATTCGGGTAGTGGCAAGGCGGCGACggaggg                                                                                                            >  1:152483/1‑141 (MQ=255)
                                tGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACtgagtga                                                                                                           <  1:225247/143‑1 (MQ=255)
                                tGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACtgagtga                                                                                                           <  1:256919/143‑1 (MQ=255)
                                       gCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGGGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCATGGCGGCAAAtgcgtgagcgggcg                                                                                                    >  2:217812/1‑137 (MQ=255)
                                          ggCCTGCGCGCTTCTGTAAACTGATGCCTTTACGGGGGCGGTGATTTTGTCTACAATCGTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGa                                                                                                 <  2:168536/143‑1 (MQ=255)
                                          ggCCTGAGCGCTTCTGTAAACTGCTGCCTTCACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGa                                                                                                 <  2:168707/143‑1 (MQ=255)
                                           gCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAg                                                                                                <  2:227665/143‑1 (MQ=255)
                                                    cTTCTGTAAGCTAGCGCCTCTACGTCGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAAGGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTaa                                                                                       <  2:689162/143‑1 (MQ=255)
                                                        tGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATCCGGCTCTTGGCATGGCGGCCAGCGAATGACTCGCCAGGAGCCTCGCtgggtat                                                                                   >  2:549249/1‑137 (MQ=255)
                                                        tGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCATAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGGGCATAGCTagccac                                                                                   >  2:687024/1‑138 (MQ=255)
                                                          tAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACAGAGTGAGTCGCCAGGAGCATAACAAACTgtgt                                                                                 >  2:68918/1‑143 (MQ=255)
                                                               tacttccTTTACGTGGCCGGTGATTTTGCCTCCAATCTTACCCCCACGTATAATGCGTAATGCAGACGTAGATCCGAGATATTCGTGTTGTGGCACGGCGGCTACTGAGTGAGTCCCCAGGAGCATAGCTAACTATGTGACTg                                                                            <  1:29882/138‑1 (MQ=255)
                                                               tAATGCCTTTACGTGGGCGGTGATTTTGTATACAATCTTACCCCCACGTATAATGCTTAATGCAGACAAATATTCTAGCTAGTCGGGTTGAGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTAtttcacga                                                                            >  2:87400/1‑136 (MQ=255)
                                                                             gggCGGTGATTTTGTCTGCAATCGTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATgaagga                                                              <  2:561187/143‑1 (MQ=255)
                                                                              ggCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATgaaggaa                                                             <  1:439550/143‑1 (MQ=255)
                                                                              ggCGGGGATTTTGTCTACAATCTTACCCCCACGTATAATGCCTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATgaaggaa                                                             <  2:224991/143‑1 (MQ=255)
                                                                                 ggTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTGGCCAGGAGCATAGCTAACTAGGTGACTGGTGGGGATGCGGGGAGcc                                                          >  1:109190/1‑143 (MQ=255)
                                                                                         tGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACCTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGt                                                  <  2:99865/143‑1 (MQ=255)
                                                                                             tACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGCGTGAGCCGCCAGGAGCAGAGCTAACTATGTGACTGGTGCGAATGAAGGAGGCCAACGCCGTccca                                              >  2:385092/1‑143 (MQ=255)
                                                                                                  tcctACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGGGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTg                                         <  1:546596/140‑1 (MQ=255)
                                                                                                        ccccACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGGCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGGATGAAGGAAGCCAACGCCGTCACAAGCTGGCTAGc                                   >  1:720494/1‑143 (MQ=255)
                                                                                                        ccccACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTCGTGGCACGGCGGCAACTGAGTGAGCCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGACGGAAGCCAACGCCGGCACAAGCTGAATCGc                                   >  1:77664/1‑143 (MQ=255)
                                                                                                           cACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGAc                                <  1:307255/143‑1 (MQ=255)
                                                                                                                  caTGCTTAATGCCGACGTATATCCGAGATATTCGGGTGGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGa                         <  1:54945/142‑1 (MQ=255)
                                                                                                                  aaTGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGa                         <  1:218346/143‑1 (MQ=255)
                                                                                                                        gactGCCGAGGTATCTCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGAt                   <  2:146617/140‑1 (MQ=255)
                                                                                                                                 ctgatagCCGTGTTATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGtt          <  2:79170/140‑1 (MQ=255)
                                                                                                                                        ccGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGCGAGTCGCCAGGAACATAGCTAACTATGTGACCGGTGCGAATGCAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGCTTTGTTCGTTGGAGCCt   >  1:310515/1‑143 (MQ=255)
                                                                                                                                         cGAGATATTCGGGTTGTGGCAAGGCGGCAACGGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACGGGCGCGTCGCAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGGTGTGGTCGTTGGAGCCTg  >  2:398342/1‑143 (MQ=255)
                                                                                                                                          |                                                                                                                                             
ATCTCCACCACCATGGGTGCAGGTGTTGCAGTTGACCAGGCTGGCCTGAGCGCTTCTGTAAACTAATGCCTTTACGTGGGCGGTGATTTTGTCTACAATCTTACCCCCACGTATAATGCTTAATGCAGACGTATATCCGAGATATTCGGGTTGTGGCAAGGCGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTG  >  NC_000913/4179518‑4179797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.