| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 417,368 | Δ5 bp | coding (227‑231/690 nt) | phoB → | response regulator in two‑component regulatory system with PhoR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 417368 | 417372 | 5 | 39 [0] | [0] 39 | phoB | response regulator in two‑component regulatory system with PhoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 417367 | 0 (0.000) | 39 (0.960) | 34/284 | 0.2 | 100% | coding (226/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR |
| ? | NC_000913 | 417373 = | 0 (0.000) | coding (232/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR | |||||
GAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTT > NC_000913/417232‑417511 | cggtcgaagcggaagattatgacagtgctgtgaatcaactgaatgaaccctggccggatttaattctcctcgactggctgttccctcgcgccaccggtatccagttcaccaaacacctcaagcgcgactccgtgacccgggcc > 2:256208‑M2/142‑143 (MQ=255) tcgaagcggaagattatgacagtgctgtgaatcaactgaatgaaccctggccggatttaattctcctcgactggatgttacctggcggctccggtatcccgttcatcaaacacctcaagcgcgagtcgaagacccgggcccgg > 2:347359‑M2/139‑140 (MQ=255) aagcggaagattatgacagtgctgtgaatcaactgaatgaaccctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAgtggt < 2:48850‑M2/8‑1 (MQ=255) cggaagattatgacagtgctgtgaatcaactgaatgaaccctggccggatttaattctcctcgactggctgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGAt < 1:660960‑M2/11‑1 (MQ=255) gaagattatgacagtgctgtgaatcaactgaatgaaccctggccggatttacttctcctcgactggatgttaccgggcggctccggtatccagttcatcagacacctcaagcgcgagtcgatgccccgagccagtgatgcagc > 2:147189‑M2/131‑139 (MQ=255) gaagattatgacagtgctgtgaatcaactgaatgaaccctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGCTGt > 1:482897‑M2/131‑143 (MQ=255) gaagattatgacagtgctgtgaatcaactgaatgaaccctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGt < 1:439975‑M2/13‑1 (MQ=255) aagatcatgacagtgctgcgaatcaactgaaggaaccctggccggatttaattctcctcgactggatgttacctggcggctccggtacccagttcatcaatcaccgcaagcgcgagtcgatgacccgggCCAGTGGTGATGtt < 1:139640‑M2/14‑1 (MQ=255) agattatgacagtgctgtgaatcaactgaatgaaccctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCGGTGGTGATGTTg > 1:38726‑M2/129‑143 (MQ=255) gacagtgctgtgaatcaactgaatgaaccctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCa < 1:418978‑M2/22‑1 (MQ=255) tgctgtgaatcaactgaatgaaccctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAggg < 2:560634‑M2/27‑1 (MQ=255) ctgtgaatcaactgaatgacccctggccttatttaatccccctcgactggaggttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGga < 1:456338‑M2/29‑1 (MQ=255) gtgaatcaactgaatgaaccctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgaggacccgggCCAGTGGTGATGTTGACGGCCAGAGGGgaag > 1:481609‑M2/113‑143 (MQ=255) gtgggtgagccctggccggattgagttctcctcgaggggatgttacctggcggcgccggtatccaggtcatcaaacgcctcaagcgcgagtcgaggagccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATc < 2:196999‑M2/40‑1 (MQ=255) aaggggccctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATcgcg < 1:317967‑M2/43‑1 (MQ=255) gtaccctggccgggtttaactctcctcgactggtgttgacgtggagtctcgggtatccagttcatcaaccacctccagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTgc < 2:631095‑M2/46‑1 (MQ=255) cctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTGGCCCGCCAGAGGGGAAGAAGACGAGCGCGTGCGCgg > 1:69205‑M2/94‑143 (MQ=255) ctggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGAGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGc > 2:525619‑M2/93‑143 (MQ=255) tggccggatttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGCGATGTTGACGGCCAGAGGGGAAGCAGACGACCGCGGGCGCGGcc > 2:407958‑M2/92‑143 (MQ=255) tttaattctcctcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAAcc > 1:491310‑M2/84‑143 (MQ=255) tcgcctggacgtgacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGa < 2:175245‑M2/71‑1 (MQ=255) tcgactggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGa > 2:197346‑M2/73‑143 (MQ=255) tcgactggatggtacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGa > 1:619304‑M2/73‑143 (MQ=255) actggatgttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACta < 2:561015‑M2/74‑1 (MQ=255) gttacctggcggctccggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGAGTAGGGCGACTTGAAACCGGCGCGGATGACTATATCAcc > 1:689704‑M2/63‑143 (MQ=255) tacctggcggctccggtatccatttcatcaaactcctcaaacgcgagtcgatgacccgggCCAGTGTTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCaa < 1:136649‑M2/83‑1 (MQ=255) ctccgggatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCg < 2:660019‑M2/93‑1 (MQ=255) cggtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCg > 2:666419‑M2/48‑143 (MQ=255) gtatccagttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGaa < 1:494174‑M2/98‑1 (MQ=255) gttcatcaaacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTGTGCGCCGAAGGagcgg > 1:725120‑M2/39‑141 (MQ=255) aacacctcaagcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGACGGAGCTGGTGGcgcg > 1:668282‑M2/31‑143 (MQ=255) ccagcgcgagacggtgaccccggCCAGGGTTGACGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCaaa < 1:165507‑M2/120‑1 (MQ=255) caggcgcgggccgaggacccgggCCAGTGGGGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCaaa < 1:256208‑M2/120‑1 (MQ=255) caagcgcgagtagaggaccctggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCaaa < 2:605175‑M2/120‑1 (MQ=255) agcgcgagtcgatgacccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCCAAGc > 1:93003‑M2/22‑143 (MQ=255) agcgcgagtcgatgacccgggCCAGTGGTGATGTAGACCGCCAGAGGGGAAGAAGAAGATCGAGTGGGCGGCCTTGAAAACGGCGCGGAGGACGATATCACCAAGCCGTTTTAGCCGAAGGGGCTGGTGGCGGGAATCAAAGc > 2:33027‑M2/22‑143 (MQ=255) gatgccccgggCCAGTGGTGATGTTGGCCGCCAGGGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATgcgc < 2:156149‑M2/132‑1 (MQ=255) ccgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCAgtagt > 2:625871‑M2/6‑141 (MQ=255) cgggCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGGAttt > 1:587796‑M2/5‑143 (MQ=255) | GAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTT > NC_000913/417232‑417511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |