| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 417,368 | Δ5 bp | coding (227‑231/690 nt) | phoB → | response regulator in two‑component regulatory system with PhoR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 417368 | 417372 | 5 | 39 [0] | [0] 39 | phoB | response regulator in two‑component regulatory system with PhoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 417367 | 0 (0.000) | 39 (0.960) | 34/284 | 0.2 | 100% | coding (226/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR |
| ? | NC_000913 | 417373 = | 0 (0.000) | coding (232/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR | |||||
CGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/417227‑417367‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTT > NC_000913/417373‑417511 CGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGCTGTT‑CCCTCGCGCCACCGGTATCCAGTTCACCAAACACCTCAAGCGCGACTCCGTGACCCGGGCC > 2:256208/1‑143 TCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCCGTTCATCAAACACCTCAAGCGCGAGTCGAAGACCCGGGCCcgg > 2:347359/1‑140 AAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGT < 2:48850/143‑1 CGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGCTGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGAT < 1:660960/143‑1 GAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTACTTCTCCTCGACTGGATGTT‑ACCGGGCGGCTCCGGTATCCAGTTCATCAGACACCTCAAGCGCGAGTCGATGCCCCGAGCCAGTGATGcagc > 2:147189/1‑139 GAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGCTGT > 1:482897/1‑143 GAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGT < 1:439975/143‑1 AAGATCATGACAGTGCTGCGAATCAACTGAAGGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTACCCAGTTCATCAATCACCGCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTT < 1:139640/143‑1 AGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCGGTGGTGATGTTG > 1:38726/1‑143 GACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCA < 1:418978/143‑1 TGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGG < 2:560634/143‑1 CTGTGAATCAACTGAATGACCCCTGGCCTTATTTAATCCCCCTCGACTGGAGGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGA < 1:456338/143‑1 GTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGAGGACCCGGGCCAGTGGTGATGTTGACGGCCAGAGGGGAAG > 1:481609/1‑143 gtgggTGAGCCCTGGCCGGATTGAGTTCTCCTCGAGGGGATGTT‑ACCTGGCGGCGCCGGTATCCAGGTCATCAAACGCCTCAAGCGCGAGTCGAGGAGCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATC < 2:196999/138‑1 aaggggCCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCG < 1:317967/137‑1 gtACCCTGGCCGGGTTTAACTCTCCTCGACTGG‑TGTTGACGTGGAGTCTCGGGTATCCAGTTCATCAACCACCTCCAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGC < 2:631095/141‑1 CCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTGGCCCGCCAGAGGGGAAGAAGACGAGCGCGTGCGCGG > 1:69205/1‑143 CTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGAGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGC > 2:525619/1‑143 TGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGCGATGTTGACGGCCAGAGGGGAAGCAGACGACCGCGGGCGCGGCC > 2:407958/1‑143 TTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACC > 1:491310/1‑143 TCGCCTGGACGTG‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGA < 2:175245/143‑1 TCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGA > 2:197346/1‑143 TCGACTGGATGGT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGA > 1:619304/1‑143 ACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTA < 2:561015/143‑1 GTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGAGTAGGGCGACTTGAAACCGGCGCGGATGACTATATCACC > 1:689704/1‑143 T‑ACCTGGCGGCTCCGGTATCCATTTCATCAAACTCCTCAAACGCGAGTCGATGACCCGGGCCAGTGTTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAA < 1:136649/143‑1 CTCCGGGATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCG < 2:660019/143‑1 CGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCG > 2:666419/1‑143 GTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAA < 1:494174/143‑1 GTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTGTGCGCCGAAGGAGCgg > 1:725120/1‑141 AACACCTCAAGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGACGGAGCTGGTGGCGCG > 1:668282/1‑143 ccAGCGCGAGACGGTGACCCCGGCCAGGGTTGACGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAA < 1:165507/141‑1 cagGCGCGGGCCGAGGACCCGGGCCAGTGGGGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAA < 1:256208/140‑1 CAAGCGCGAGTAGAGGACCCTGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAA < 2:605175/143‑1 AGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCCAAGC > 1:93003/1‑143 AGCGCGAGTCGATGACCCGGGCCAGTGGTGATGTAGACCGCCAGAGGGGAAGAAGAAGATCGAGTGGGCGGCCTTGAAAACGGCGCGGAGGACGATATCACCAAGCCGTTTTAGCCGAAGGGGCTGGTGGCGGGAATCAAAGC > 2:33027/1‑143 GATGCCCCGGGCCAGTGGTGATGTTGGCCGCCAGGGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGC < 2:156149/143‑1 CCGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCAGTAgt > 2:625871/1‑141 CGGGCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGGATTT > 1:587796/1‑143 CGGTCGAAGCGGAAGATTATGACAGTGCTGTGAATCAACTGAATGAACCCTGGCCGGATTTAATTCTCCTCGACTGGATGTT‑ACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/417227‑417367‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTT > NC_000913/417373‑417511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |