mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.2% | 42.9 / 53.4 | 68 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 34 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4168398 = | 27 (0.490) | 8 (0.150) | 7/272 | 5.2 | 23.6% | noncoding (27/76 nt) | gltT | tRNA‑Glu |
| ? | NC_000913 | 4209819 = | NA (NA) | noncoding (46/76 nt) | gltV | tRNA‑Glu | |||||
| * | ? | NC_000913 | 3943467 = | NA (NA) | 8 (0.150) | 7/272 | 5.2 | 16.3% | noncoding (33/76 nt) | gltU | tRNA‑Glu |
| ? | NC_000913 | 3943474 = | 43 (0.790) | noncoding (40/76 nt) | gltU | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 2729418 | 27 (0.490) | 8 (0.150) | 7/272 | 5.2 | 23.6% | noncoding (27/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 3943480 = | NA (NA) | noncoding (46/76 nt) | gltU | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 2729405 | 32 (0.590) | 7 (0.130) | 6/272 | 5.7 | 19.5% | noncoding (40/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 4168404 = | 27 (0.520) | noncoding (33/76 nt) | gltT | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 2729405 | 32 (0.590) | 7 (0.130) | 6/272 | 5.7 | 18.6% | noncoding (40/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 3943467 = | NA (NA) | noncoding (33/76 nt) | gltU | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 2729405 | 32 (0.590) | 7 (0.130) | 6/272 | 5.7 | 19.5% | noncoding (40/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | = 2729412 | 27 (0.520) | noncoding (33/76 nt) | gltW | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4556943 | 64 (1.170) | 5 (0.090) | 5/274 | 6.2 | 7.8% | intergenic (‑623/‑50) | yjiC/iraD | uncharacterized protein/RpoS stabilzer after DNA damage, anti‑RssB factor |
| ? | NC_000913 | = 4556951 | 56 (1.060) | intergenic (‑631/‑42) | yjiC/iraD | uncharacterized protein/RpoS stabilzer after DNA damage, anti‑RssB factor | |||||
| * | ? | NC_000913 | 2945954 = | 70 (1.280) | 3 (0.070) +33 bp |
3/218 | 6.2 | 5.3% | noncoding (59/97 nt) | RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3676121 = | NA (NA) | noncoding (1/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 3915505 = | 52 (0.950) | 5 (0.100) | 4/266 | 6.6 | 8.9% | intergenic (‑305/+48) | glmU/atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| ? | NC_000913 | 3915535 = | 54 (1.060) | intergenic (‑335/+18) | glmU/atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit | |||||
| * | ? | NC_000913 | = 1907965 | 70 (1.280) | 5 (0.100) | 4/270 | 6.6 | 6.7% | intergenic (‑374/+296) | yobF/yebO | DUF2527 family heat‑induced protein/putative inner membrane protein |
| ? | NC_000913 | = 1907969 | 73 (1.410) | intergenic (‑378/+292) | yobF/yebO | DUF2527 family heat‑induced protein/putative inner membrane protein | |||||