| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2945954 = | 70 (1.280) | 3 (0.070) +CTTGCGAATTCAATATATTGTATGGAAATTCAG |
3/218 | 6.2 | 5.3% | noncoding (59/97 nt) | RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3676121 = | NA (NA) | noncoding (1/161 nt) | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP264 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCC > NC_000913/3675979‑3676263 | gcCATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGATTCCTGAGATGCTTCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAg > 1:723223/1‑143 (MQ=255) cATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGcc > 1:488578/1‑143 (MQ=255) tatatCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTCTATCTGGAGGCGCAGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCCTGAGACGCGACCTCAGTCGTGGTGATAAGCGTGAAAAGCCtc > 2:165145/1‑142 (MQ=255) atacCGCAGCCTGGTGGCAGACTAACTACGTGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGa < 1:669366/143‑1 (MQ=255) tCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGGCGTTGTAATAAGAGTGAAGAGCCTGATgc > 1:604459/1‑143 (MQ=255) gCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGACAAGCCTGATgcgc > 1:683257/1‑143 (MQ=255) ttGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCttct > 1:166727/1‑141 (MQ=255) gACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCGTAGCAGGc > 2:40929/1‑143 (MQ=255) gACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGGCGTTGTAATACGAGTGAAAAGCCTGACGCGCTACGCTTCTCAggg > 1:459561/1‑142 (MQ=255) taCGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGCCCTGAAtt > 2:295196/1‑143 (MQ=255) ggCTAGGTGCGGTGGGGATATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACACATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTcga > 2:861907/1‑141 (MQ=255) tAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATAc > 2:65980/1‑143 (MQ=255) gTGGGGTTACATCTGGCGGCGATGGCTGGCGTGACGTTAAGCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGGGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATAtt < 2:68424/143‑1 (MQ=255) gggTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTACTAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGACTGAGTTTCCATACAAAATATTGaa > 2:879481/1‑143 (MQ=255) gggTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGaa < 1:267539/143‑1 (MQ=255) ttATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTc > 1:202761/1‑143 (MQ=255) ggcgACGGCTGGCTGGGCGTGCATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAAGTTCCATACAATATATTGAATTCGCAAGGATTTg < 1:159068/143‑1 (MQ=255) cgATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTa < 1:719967/143‑1 (MQ=255) tggctggcTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGc > 1:396439/1‑143 (MQ=255) ggcttgttTGACTTTAATCGCTCTGCTGCTGACCCATGAGACTCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGcc < 2:372728/143‑1 (MQ=39) ctggctTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTACTAAGAGTCAAAAGCATGCTGAGCTAAGCATAGCAGCCCTCAACTTACACACCATAACTTGAATTAGCCCCGCTTTGCAGGccac > 2:395389/1‑141 (MQ=255) ctTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGCTaa > 2:773417/1‑143 (MQ=255) ttGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCCGGCCTGCATTTCCATACAATATATTGAATTCGCAAAGATTTGTAGGCCGGATAAg > 1:533326/1‑143 (MQ=255) ttGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGGCGGATAAg > 2:768599/1‑143 (MQ=255) ttGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAg > 1:833072/1‑143 (MQ=255) tGACGTTAAGCGCCCTGCTGCTGACCCATGCGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAgg < 2:782583/143‑1 (MQ=255) tGACGTCAATCGCCCTGCTGCTGACCGATGGGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAgg < 2:624542/143‑1 (MQ=255) aCGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCg < 1:514391/143‑1 (MQ=255) aCGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCg > 1:711720/1‑143 (MQ=255) gTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGtt > 1:619002/1‑143 (MQ=255) gTTAATCGCCCTGCTGCTGACACATGAGAAGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTACATACAATATATTGAATTCGCAAGGATTTGTAGCGCAGACAAGGCGtt > 2:194604/1‑143 (MQ=39) gctgctgACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATcc > 1:779495/1‑143 (MQ=255) tgACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAt > 1:394138/1‑143 (MQ=255) gACCCATGAGACGCGACATCAGTTGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTCTCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTCTTAGGCCCGCGAACGCGTTCACGCCTCATCCGGCATg > 2:982600/1‑143 (MQ=38) cccTTGAGCCGCTACATCACTCGTTGCAACGAGAGTGAAAAGCCTGATGCGCTACGCCGATCAGGCCTGAATTTCCATACAAGAGATTGAAGTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGaa < 1:68443/143‑1 (MQ=21) aTGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGCTTTGTAGGCCGGATAACGCGTTCACGCCGCATCCAGCATGAACaa > 2:670936/1‑143 (MQ=255) tGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACaaa < 1:165145/143‑1 (MQ=255) gcggcgcgACAGCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCTCTACGCTTATCAGGCCTGAATTCCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAg < 1:260471/139‑1 (MQ=255) gcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGCCTATATATACAATATATTGAGATCGCAAGGCTTTGTAGGCCGGATAAAGCGTTCCCGCCGCATCCGGCATGAACAAAGcacca > 2:395018/1‑141 (MQ=21) gcgACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCacac > 2:224041/1‑143 (MQ=255) gACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGTTTGCATCACGATTTAGTATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACtt > 1:185663/1‑143 (MQ=21) agcAGTCTTTGTAATAAGAGTGAGAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATCTATTGCATTCTCTATCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGc < 2:652059/141‑1 (MQ=21) agcAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGc < 1:65980/141‑1 (MQ=255) tCAGCCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGcc < 1:554968/143‑1 (MQ=255) gTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAAt > 1:815132/1‑143 (MQ=255) ttGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGCACAAAGCACCCTTGGccggcactc > 1:384256/1‑136 (MQ=25) tGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGAATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCt < 1:834649/143‑1 (MQ=255) gTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTa > 1:349271/1‑143 (MQ=255) taataaGAGTGAAATGCCTGTTGCGCTTCTCTTATCAGGCCTGAATTTCCATACAATATAGTGAATGCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTaa < 1:593745/143‑1 (MQ=25) taataaGAGTGAAAAGCCTGATGCGCTACGCGTAGCAGGCCTGAATTTCCATACAATATATTCAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTaa < 1:498720/143‑1 (MQ=255) ataaGCGGGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATGTCCATACAATATATTGAATTCGCAACGATGAGGACGCCGTATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAAt < 2:394299/143‑1 (MQ=25) ataaGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAAt > 1:956543/1‑143 (MQ=255) gagTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCCCACTTTGCCAACAATCTCAATCTGt > 1:121358/1‑143 (MQ=255) agTTAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACACTGAACACTTTGCCTACAATCTAAATCTGtt < 2:353660/143‑1 (MQ=25) agTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGtt < 1:945838/143‑1 (MQ=255) agTGAAAAGCCTGAGGCGCTACGCGTATCAGGCTCGAATTCCCATACAAGATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACACTCTAAATCTGtt < 2:871824/143‑1 (MQ=25) gAAAAGCCTGATGCGCTACGCTTATCAGGTCGTAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTaa < 2:202761/143‑1 (MQ=255) aaaaGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAAt > 1:92602/1‑143 (MQ=255) aaaaGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAAt < 1:224041/143‑1 (MQ=255) aaaaGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCCGCCTGAACAAAGCACACTTTGCCAACCATCTAAATGTGTTTTAt > 1:341831/1‑143 (MQ=25) gCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAAGATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGcc < 1:672593/143‑1 (MQ=255) | GCCATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAATAAGAGTGAAAAGCCTGATGCGCTACGCTTATCAGGCCTGAATTTCCATACAATATATTGAATTCGCAAGGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCACACTTTGCCAACAATCTAAATCTGTTTAATTGCC > NC_000913/3675979‑3676263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |