breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,462,8810C.25.0% 24.6 / 10.4 16intergenic (+235/‑131)fadL/yfdFlong‑chain fatty acid outer membrane transporter/uncharacterized protein
*NC_0009133,156,5900CA21.6% 75.3 / 17.5 37intergenic (+72/‑33)yqhD/dkgAaldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
*NC_0009133,156,5910TG21.6% 68.9 / 20.5 37intergenic (+73/‑32)yqhD/dkgAaldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A

Marginal new junction evidence (lowest skew 10 of 19 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1604785 =34 (1.370)4 (0.170) 4/256 2.6 10.6% coding (739/993 nt) lsrD autoinducer 2 import system permease protein
?NC_000913 1604815 = 35 (1.490)coding (769/993 nt) lsrD autoinducer 2 import system permease protein
* ? NC_000913 4608119 =23 (0.930)4 (0.170) 4/258 2.7 14.5% coding (317/414 nt) holD DNA polymerase III, psi subunit
?NC_000913 4608161 = 25 (1.050)coding (359/414 nt) holD DNA polymerase III, psi subunit
* ? NC_000913 = 344012646 (1.850)4 (0.170) 4/258 2.7 8.3% coding (904/990 nt) rpoA RNA polymerase, alpha subunit
?NC_000913 = 3440131 44 (1.850)coding (899/990 nt) rpoA RNA polymerase, alpha subunit
* ? NC_000913 2617476 =27 (1.090)4 (0.170) 4/258 2.7 13.4% coding (1383/1464 nt) bepA OM protein maintenance and assembly metalloprotease and chaperone, periplasmic
?NC_000913 2617529 = 26 (1.090)coding (1436/1464 nt) bepA OM protein maintenance and assembly metalloprotease and chaperone, periplasmic
* ? NC_000913 1805292 =23 (0.930)4 (0.160) 4/264 2.7 15.2% intergenic (+20/+33) yniD/ydiY uncharacterized protein/acid‑inducible putative outer membrane protein
?NC_000913 1805317 = 22 (0.910)intergenic (+45/+8) yniD/ydiY uncharacterized protein/acid‑inducible putative outer membrane protein
* ? NC_000913 158081 =25 (1.010)4 (0.170) 4/258 2.7 15.7% coding (1046/1398 nt) pcnB poly(A) polymerase
?NC_000913 158131 = 19 (0.800)coding (996/1398 nt) pcnB poly(A) polymerase
* ? NC_000913 = 378008519 (0.760)3 (0.130) 3/252 3.0 14.4% coding (259/1191 nt) lldD L‑lactate dehydrogenase, FMN‑linked
?NC_000913 = 3780114 18 (0.780)coding (288/1191 nt) lldD L‑lactate dehydrogenase, FMN‑linked
* ? NC_000913 = 351675016 (0.640)3 (0.130) 3/254 3.0 15.0% coding (557/1287 nt) damX cell division protein that binds to the septal ring
?NC_000913 = 3516781 19 (0.810)coding (526/1287 nt) damX cell division protein that binds to the septal ring
* ? NC_000913 2645510 =24 (0.970)4 (0.170) 3/260 3.0 14.5% coding (1816/2313 nt) pbpC penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein
?NC_000913 2645550 = 24 (1.000)coding (1776/2313 nt) pbpC penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein
* ? NC_000913 = 242128330 (1.210)3 (0.130) 3/252 3.0 10.2% intergenic (+15/‑42) yfcG/folX GSH‑dependent disulfide bond oxidoreductase/D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase
?NC_000913 = 2421313 25 (1.080)intergenic (+45/‑12) yfcG/folX GSH‑dependent disulfide bond oxidoreductase/D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase