mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 40.6% | 24.0 / 33.0 | 32 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4213168 = | 43 (1.310) | 5 (0.170) | 5/256 | 3.4 | 10.5% | intergenic (+9/‑66) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| ? | NC_000913 | 4213199 = | 46 (1.520) | intergenic (+40/‑35) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 2316985 | NA (NA) | 3 (0.130) +40 bp |
3/198 | 3.4 | 8.9% | noncoding (152/197 nt) | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4549883 | 43 (1.310) | intergenic (+173/+70) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter | |||||
| * | ? | NC_000913 | 503443 = | 40 (1.220) | 4 (0.130) | 4/256 | 3.8 | 11.6% | intergenic (‑205/+33) | ybaL/fsr | inner membrane putative NAD(P)‑binding transporter/putative fosmidomycin efflux system protein |
| ? | NC_000913 | 503470 = | 24 (0.790) | intergenic (‑232/+6) | ybaL/fsr | inner membrane putative NAD(P)‑binding transporter/putative fosmidomycin efflux system protein | |||||
| * | ? | NC_000913 | = 3907801 | 35 (1.060) | 4 (0.130) | 4/264 | 3.9 | 11.1% | coding (566/774 nt) | pstB | phosphate ABC transporter ATPase |
| ? | NC_000913 | = 3907849 | 31 (0.990) | coding (518/774 nt) | pstB | phosphate ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 4542690 | 30 (0.910) | 3 (0.100) | 3/260 | 4.3 | 8.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 41 (1.330) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 31 (0.940) | 3 (0.100) | 3/260 | 4.3 | 7.9% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 41 (1.330) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1843724 = | NA (NA) | 3 (0.100) | 3/264 | 4.3 | NA | noncoding (1/93 nt) | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 1843750 = | NA (NA) | noncoding (27/93 nt) | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 1040187 | 24 (0.730) | 3 (0.100) | 3/266 | 4.3 | 11.8% | coding (892/1137 nt) | cbdB | cytochrome bd‑II oxidase, subunit II |
| ? | NC_000913 | = 1040211 | 22 (0.700) | coding (916/1137 nt) | cbdB | cytochrome bd‑II oxidase, subunit II | |||||
| * | ? | NC_000913 | 3642916 = | 31 (0.940) | 3 (0.090) | 3/268 | 4.4 | 8.6% | coding (217/753 nt) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 3642938 = | 34 (1.070) | coding (195/753 nt) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 3151168 = | 20 (0.610) | 3 (0.090) | 3/274 | 4.4 | 10.6% | coding (76/426 nt) | exbD | membrane spanning protein in TonB‑ExbB‑ExbD complex |
| ? | NC_000913 | 3151218 = | 31 (0.960) | coding (26/426 nt) | exbD | membrane spanning protein in TonB‑ExbB‑ExbD complex | |||||