| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3642916 = | 31 (0.940) | 3 (0.090) | 3/268 | 4.4 | 8.6% | coding (217/753 nt) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 3642938 = | 34 (1.070) | coding (195/753 nt) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGGGGGCTGGAGCACGATGAAGACAACCTGATGGCGCTGGTGTTAACGCCGGAACATCTGGAATTGCGCAAGCGTGATGAGCCAAAACTTGGCGGCATCTTTGTTGATTTTGTTGGCGGAGCGATGGCGCACCGACGCAAATTCGGCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3643067‑3642916‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgCGCCATCGCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAA > NC_000913/3642938‑3643080 CTGGGGGCTGGAGCACGATGAAGACAACCTGATGGCGCTGGTGTTAACGCCGGAACATCTGGAATTGCGCAAGCGTGATGAGCCAAAACTTGGCGGCATCTTTGTTGATTTTGTTGGCGGAGCGATGGCGCACCGACGCAAATTCGGCG < 1:63425/149‑1CTGGGGGCTGGAGCACGATGAAGACAACCTGATGGCGCTGGTGTTAACGCCGGAACATCTGGAATTGCGCAAGCGTGATGAGCCAAAACTTGGCGGCATCTTTGTTGATTTTGTTGGCGGAGCGATGGCGCACCGACGCAAATTCGGCG > 2:63425/1‑149 GGGGGCTGGAGCACTATGAAGACAACCTGATGGCGCTGGTGTTAACGCCGGAACATCTGGAATTGCGCAAGCGTGATGAGCCAAAACTTGGCGGCATCTTTGTTGATTTTGTTGGCGGAGCGATGGCGCACCGACGCAAATTCGGCGGT < 5:2065/149‑1 GGGGCTGGAGCACGATGAAGACAACCTGATGGCGCTGGTGTTAACGCCGGAACATCTGGAATTGCGCAAGCGTGATGAGCCAAAACTTGGCGGCATCTTTGTTGATTTTGTTGGCGGAGCGATGGCGCACCGACGCAAATTCGGCGGT < 4:48941/148‑1 GCGCACCGACGCAAATTCGGCGGTGCGCCATCGCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCG > 1:2413/1‑88 GCGCACCGACGCAAATTCGGCGGTGCGCCATCGCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCG < 2:2413/88‑1 GCACCGAGGCAAATTCGGCGGTGCGCCATCGCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCC > 2:126141/1‑149 GTGCGCCATCGCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAA > 7:50689/1‑146 CTGGGGGCTGGAGCACGATGAAGACAACCTGATGGCGCTGGTGTTAACGCCGGAACATCTGGAATTGCGCAAGCGTGATGAGCCAAAACTTGGCGGCATCTTTGTTGATTTTGTTGGCGGAGCGATGGCGCACCGACGCAAATTCGGCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3643067‑3642916‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgCGCCATCGCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAA > NC_000913/3642938‑3643080 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |