mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 40.4% | 93.8 / 125.7 | 113 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 78 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 65 (0.550) | 24 (0.230) | 23/248 | 5.1 | 25.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 81 (0.770) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1096961 = | 98 (0.820) | 10 (0.130) +47 bp |
7/186 | 8.4 | 13.3% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097243 = | NA (NA) | intergenic (+414/+322) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096961 = | 98 (0.820) | 10 (0.130) +47 bp |
7/186 | 8.4 | 16.7% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097062 = | 52 (0.440) | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 394471 | 138 (1.160) | 14 (0.130) | 12/254 | 8.4 | 9.9% | intergenic (+53/‑35) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator |
| ? | NC_000913 | = 394475 | 130 (1.200) | intergenic (+57/‑31) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator | |||||
| * | ? | NC_000913 | = 2103104 | 166 (1.400) | 10 (0.090) | 10/262 | 9.4 | 6.2% | pseudogene (286/446 nt) | wbbL | pseudogene, lipopolysaccharide biosynthesis protein |
| ? | NC_000913 | = 2103107 | 149 (1.340) | pseudogene (283/446 nt) | wbbL | pseudogene, lipopolysaccharide biosynthesis protein | |||||
| * | ? | NC_000913 | = 3411602 | 133 (1.120) | 10 (0.090) | 9/258 | 9.8 | 7.7% | intergenic (+35/‑51) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 3411616 | 117 (1.070) | intergenic (+49/‑37) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 3798221 = | 208 (1.750) | 6 (0.060) | 6/254 | 11.1 | 3.0% | intergenic (+14/+18) | waaL/waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| ? | NC_000913 | 3798249 = | 193 (1.790) | coding (1064/1074 nt) | waaU | lipopolysaccharide core biosynthesis | |||||
| * | ? | NC_000913 | 1097426 = | NA (NA) | 7 (0.060) | 7/276 | 11.2 | 41.5% | intergenic (+597/+139) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097455 = | 10 (0.080) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097245 = | NA (NA) | 7 (0.060) | 7/276 | 11.2 | 24.4% | intergenic (+416/+320) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097274 = | 22 (0.180) | intergenic (+445/+291) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097062 = | 52 (0.440) | 7 (0.060) | 7/276 | 11.2 | 19.1% | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097457 = | 8 (0.070) | intergenic (+628/+108) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||