New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 394471	138 (1.160)	14 (0.130)	12/254	8.4	9.9%	intergenic (+53/‑35)	yaiT/yaiV	pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator
	?	NC_000913	= 394475	130 (1.200)					intergenic (+57/‑31)	yaiT/yaiV	pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/394316‑394471 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatgcccgtcaaATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTGAA  <  NC_000913/394475‑394329                                                                                                                                                                                                                                                                                                                 CTTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGC                                                                                                                                                            <  2:491856/149‑1  TTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCC                                                                                                                                                           >  6:19875/1‑149  TTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCC                                                                                                                                                           >  3:330486/1‑149   TCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCC                                                                                                                                                          >  8:381307/1‑149    CACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCG                                                                                                                                                         >  7:82039/1‑149    CACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCC                                                                                                                                                           <  5:19875/147‑1       CAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC                                                                                                                                                       >  1:399992/1‑148       CAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC                                                                                                                                                       >  4:239067/1‑148       CAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC                                                                                                                                                       >  4:233493/1‑148       CAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC                                                                                                                                                       >  8:188722/1‑148       CAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC                                                                                                                                                       >  3:91961/1‑148        AAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC                                                                                                                                                       >  8:363888/1‑147          GAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTAACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCACGTCAA                                                                                                                                                     >  5:478664/1‑147          GAACTTCAGCGCCTAACCCGCTGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCAGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAA                                                                                                                                                     <  6:478664/147‑1            ACTTCACCGCCTATACCCAAGCTAACTACATCGGTGGTCGTGACGTAGATCAAGACTGGTCAGCGAACGTGGGTGGTAAATATACCTTGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAAAGCCCGTCAAATCC                                                                                                                                                 <  2:114879/149‑1                      CTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAACGCCCGTCAAATCCTTGACGGGCA                                                                                                                                       <  1:517099/149‑1                                         CTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC                                                                                                                                                       <  2:236027/114‑1                                         CTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC                                                                                                                                                       >  1:236027/1‑114                                          TCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGG                                                                                                                                          >  7:514455/1‑126                                          TCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGG                                                                                                                                          <  8:514455/126‑1                                                   GTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTT                                                                                                          >  4:159412/1‑149                                                      ACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGA                                                                                                                                             >  8:218851/1‑111                                                      ACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGA                                                                                                                                             <  7:218851/111‑1                                                        GTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCG                                                                                                        >  8:226/1‑146                                                        GTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCG                                                                                                        <  7:226/146‑1                                                             TCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGA                                                                                                      <  5:134000/143‑1                                                             TCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGA                                                                                                      >  6:134000/1‑143                                                             TCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGA                                                                                                      >  4:424694/1‑143                                                             TCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGA                                                                                                      <  3:424694/143‑1                                                                   CTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATT                                                                                          <  3:159412/149‑1                                                                                                                                                  ATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTAT            <  5:260403/148‑1                                                                                                                                                     CCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGC        >  3:239067/1‑149                                                                                                                                                     CCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGC        >  1:508495/1‑149                                                                                                                                                      CCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCG       >  4:84174/1‑149                                                                                                                                                      CCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGA                              >  7:452296/1‑126                                                                                                                                                      CCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGA                              <  8:452296/126‑1                                                                                                                                                           AAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTGAA  <  2:117303/149‑1                                                                                                                                                           AAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTGAA  <  1:331263/149‑1                                                                                                                                                                                                                                                                                                                 CTTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/394316‑394471 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatgcccgtcaaATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTGAA  <  NC_000913/394475‑394329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.