mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,037,495 | 0 | A | T | 39.4% | 8.0 / 33.3 | 34 | intergenic (+161/‑23) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3423821 = | NA (NA) | 6 (0.150) | 4/272 | 5.4 | 11.6% | intergenic (‑36/+57) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 3946687 | 48 (1.150) | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | 2726198 = | NA (NA) | 6 (0.150) | 4/272 | 5.4 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726222 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 228744 | 32 (0.770) | 6 (0.150) | 4/272 | 5.4 | 16.4% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2726222 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 4542683 = | 48 (1.150) | 3 (0.080) | 3/266 | 5.9 | 6.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542997 = | 48 (1.230) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 3814426 | 37 (0.890) | 9 (0.230) | 3/268 | 5.9 | 20.0% | intergenic (+40/‑67) | dut/slmA | deoxyuridinetriphosphatase/nucleoid occlusion factor, anti‑FtsZ division inhibitor |
| ? | NC_000913 | = 3814431 | 37 (0.940) | intergenic (+45/‑62) | dut/slmA | deoxyuridinetriphosphatase/nucleoid occlusion factor, anti‑FtsZ division inhibitor | |||||
| * | ? | NC_000913 | 465407 = | 43 (1.030) | 3 (0.070) | 3/274 | 6.0 | 6.4% | coding (141/696 nt) | queC | 7‑cyano‑7‑deazaguanine (preQ0) synthase, queuosine biosynthesis |
| ? | NC_000913 | 465460 = | 46 (1.140) | coding (88/696 nt) | queC | 7‑cyano‑7‑deazaguanine (preQ0) synthase, queuosine biosynthesis | |||||