New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4542683 =	48 (1.150)	3 (0.080)	3/266	5.9	6.1%	intergenic (+49/‑433)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	NC_000913	4542997 =	48 (1.230)					intergenic (+363/‑119)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAAT  >  NC_000913/4542855‑4543138                                                                                                                                               |                                                                                                                                              cccTTCCCCATTCTTCTCTCCAAAAGCCACCCCATGCAATATAAACATCTATAAATAAAGATAACAATAAAACATGAAGTCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCaaa                                                                                                                                               <  2:395360/141‑1 (MQ=255)       cgcATTCTTCTCTCCAAAAGCCACCTCATGCAATATAAACAGCTATAAATAAAGATAACAATAGAATATTAAGCAAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTc                                                                                                                                         <  1:137709/141‑1 (MQ=255)        tCATTCTTCTCGCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCa                                                                                                                                        >  2:484409/1‑143 (MQ=255)              ttctCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtttt                                                                                                                                  <  1:658703/143‑1 (MQ=255)               tctctcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg                                                                                                                                 <  1:214572/143‑1 (MQ=255)                ctctcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATGTTATGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg                                                                                                                                <  2:631176/143‑1 (MQ=255)                ctctcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCATTTgg                                                                                                                                >  1:216374/1‑143 (MQ=255)                 tctcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGCATATTAAGCCAACGAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTGTTggg                                                                                                                               >  1:642367/1‑143 (MQ=255)                  ctcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAACAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgggg                                                                                                                              <  1:458585/143‑1 (MQ=255)                   tcCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTAAAAATGGCCCCAAATGTTTCATCCTTTgggag                                                                                                                             >  2:133700/1‑141 (MQ=255)                            caccTCGTGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg                                                                                                                    <  2:285672/143‑1 (MQ=255)                            caccTCATGCAATATACACGTCGATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg                                                                                                                    <  2:470419/143‑1 (MQ=255)                            caccTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCGACAAATGTCTCATCTTTTGGGGGAAAAcattg                                                                                                                    >  2:347021/1‑139 (MQ=255)                            caccTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg                                                                                                                    <  1:62755/143‑1 (MQ=255)                            caccTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGCGAAAACtgtg                                                                                                                    >  2:334087/1‑143 (MQ=255)                                  aTGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAATCAAAATAGCTCCAAATGTTTCATCTTTTGGCGGAAACCACTGCAgtat                                                                                                              >  2:602013/1‑141 (MQ=255)                                     cAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg                                                                                                           >  1:630829/1‑143 (MQ=255)                                       atatAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCa                                                                                                         <  2:659290/143‑1 (MQ=255)                                        tataAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAg                                                                                                        >  2:565312/1‑143 (MQ=255)                                                   ataaataaAGATAACAATAGAATATTAAGCCATCAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt                                                                                             <  1:517225/143‑1 (MQ=255)                                                   ataaataaAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt                                                                                             >  2:463213/1‑143 (MQ=255)                                                     aaataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa                                                                                           >  1:394608/1‑143 (MQ=255)                                                     aaataaaGATAACAATAGAAGATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTAGGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa                                                                                           <  2:38725/143‑1 (MQ=255)                                                      aataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTac                                                                                          <  1:475404/143‑1 (MQ=255)                                                      aataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATATTTCATCCTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTac                                                                                          >  1:506343/1‑143 (MQ=255)                                                         aaaGATAACAATAGATTATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa                                                                                       <  2:576823/143‑1 (MQ=255)                                                                aCAAGAGCATATTAAGCCAACAAATAAACTGAAAAAGTTTGACCGTGATGGTGTCCTCGATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt                                                                                <  1:371202/143‑1 (MQ=255)                                                                    tAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCATCTATGAGACAAAAAGGCCACAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAGgtgtct                                                                            >  2:590607/1‑141 (MQ=255)                                                                        atatTAAGCCAACAAATAAGCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCGAAATGGTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCCTTTACAAAACAAAGTGTACAGaa                                                                        <  2:672926/143‑1 (MQ=255)                                                                            tAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCACAAATGTTTCATCTGTTGGGGGAAAAATGTGCAGTGTTGGCAGTCAAAGTCGTTTACAAAACAAAGTGTAGAGAAGGAc                                                                    >  1:200939/1‑143 (MQ=255)                                                                                             tgcagaaGTTTGTCCGAGATGCTTTCCTCTGTGAGTCACTATGGCCCCCGTTGTTTCTTCTTTTGGTGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTTTATTATAAATTTTACAGAACGACTGCCCATGTCGATTTAg                                                   <  2:185177/138‑1 (MQ=255)                                                                                              gAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGCAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGaatcagc                                                  >  2:450048/1‑137 (MQ=255)                                                                                               aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGaa                                                 >  1:685681/1‑143 (MQ=255)                                                                                                  aaGTTTGTCCGCGATGCTGTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATa                                              <  1:658660/143‑1 (MQ=255)                                                                                                       tGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttt                                         <  1:358797/143‑1 (MQ=255)                                                                                                         tCCGCGATGGTTGCGTCAGTGAGTCAAAATGGCCCGAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttttt                                       <  1:703208/143‑1 (MQ=255)                                                                                                         tCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAACACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGtttttt                                       >  1:288316/1‑143 (MQ=255)                                                                                                           cgcgATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGGTGGCGGTCAAACTCGTTTACAAAACAAGGTGTACAGAACGACTGCCCATGTCGCTTTAGAAATCGTTTTTTga                                     >  1:457431/1‑143 (MQ=255)                                                                                                            gcgATGCTTTCCTCTATGAGTCAAAATGGCCACAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTGACAAAACAAAGTGTACAGAACGACTGCACATGTCGCTTCAGAAATAGTTCTTTgaa                                    >  2:501301/1‑143 (MQ=255)                                                                                                             cgATGCTTTCCTCTATGAGTCAACATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa                                   <  2:14643/143‑1 (MQ=255)                                                                                                                 gCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTCGAAATAGTTCTTTcaaagaaa                               >  1:449333/1‑143 (MQ=255)                                                                                                                     tCCTCTATGAGTCAAAATGGCCCCAAATGTTTAATATTTTGGGGGAAAACTGTGCAGCGTTGGCAGTCAAATTCGTTTACAAAACAAAGTGTACAGAACGACTGACCATGTCGATTTAGAAATAGCTTTATgaaaggaaagaa                           >  2:312967/1‑141 (MQ=255)                                                                                                                          tATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATg                      >  2:206054/1‑143 (MQ=255)                                                                                                                             gAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGAAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAACAGAACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGaaa                   <  1:417246/143‑1 (MQ=255)                                                                                                                               gTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGTAGAACTGTGCGGTTTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAAt                 >  1:537745/1‑143 (MQ=255)                                                                                                                                tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAACCTCGTCTACAACCCAAAGTGTACAGAACGACTGCCCCTGTGGATTCAGAAATAGTTTTTAGAAACGAAAGCAGCATGAAAAtt                >  1:58381/1‑143 (MQ=255)                                                                                                                                tCAAAATGGCCCCAAATGTTTCAGCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCAATGTCGAGTTAGAAATAGTTATCTGAAAGGGAAGCAGCATGAAAAta                >  2:26049/1‑142 (MQ=255)                                                                                                                                 cgacgtGGCACCAAATGTTGCATCTTTTGGAGGAAAACTGTGCAGTGTTGGCGGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTa               <  2:655359/138‑1 (MQ=255)                                                                                                                                   aaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTaaa             <  1:608397/143‑1 (MQ=255)                                                                                                                                        gCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActct        <  1:700899/143‑1 (MQ=255)                                                                                                                                        gCCCCAAATGTTTCATCTTTTGGGCGAAAACTGTGCAGTCCTGGCAGTCAAACTCGTTTACAAAAAAAATTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAActct        <  2:302347/143‑1 (MQ=255)                                                                                                                                         ccccAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa                                   <  2:483161/115‑1 (MQ=255)                                                                                                                                         ccccAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTgaaa                                   >  1:483161/1‑115 (MQ=255)                                                                                                                                              aaTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAAt  <  1:484409/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                              ATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGATTTAGAAATAGTTTTTTGAAAGGAAAGCAGCATGAAAATTAAAACTCTGGCAAT  >  NC_000913/4542855‑4543138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.