New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3312298 =	61 (1.110)	5 (0.090)	5/284	6.4	8.0%	coding (303/1344 nt)	argG	argininosuccinate synthetase
	?	CP009273	3312323 =	56 (1.050)					coding (328/1344 nt)	argG	argininosuccinate synthetase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCAATGCTGAACTGCAGATTTACAAACCGT  >  CP009273/3312177‑3312464                                                                                                                                                   |                                                                                                                                              tGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACAGGACGCCGCTGGGCCGCGCCGTGGCt                                                                                                                                             >  1:661219/1‑149 (MQ=255)   gAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTgg                                                                                                                                           >  1:502080/1‑149 (MQ=255)     aTACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTa                                                                                                                                         <  1:558015/149‑1 (MQ=255)                 gaACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGCCCCATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTtg                                                                                                                             <  1:690972/149‑1 (MQ=255)                   aCGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTgg                                                                                                                                <  2:807964/144‑1 (MQ=255)                   aCGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTgg                                                                                                                                <  2:807953/144‑1 (MQ=255)                      cACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGGCTGGTTCCTTGCTGGTTGCTGCg                                                                                                                        >  1:301807/1‑149 (MQ=255)                               tCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAaagaa                                                                                                               <  1:699054/149‑1 (MQ=255)                                cGACTGCCGCAAACAACTGGGGGCCGAAGTTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGaa                                                                                                                   <  2:162313/144‑1 (MQ=255)                                   cTGCCGCAAACAACTGGTGGCCGAATGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCTGTGACTGGTACCATGCTGGTTGCTTCGATGAAAGAAGATg                                                                                                           <  1:683008/149‑1 (MQ=255)                                      ccGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCGTTTCATAACACCACCGGCGGCCTGACCTATTTCAACCCGACGGCGCTGGGCCGCGCCGTGGCGGGTACCATGCTGGTTGCGGCGATGAAagaaga                                                                                                             >  2:75001/1‑144 (MQ=255)                                         cAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGGGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATgg                                                                                                          >  2:355302/1‑144 (MQ=255)                                            acaacTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCgg                                                                                                       >  2:356544/1‑143 (MQ=255)                                             ccacTGGTGGCCGAAGGTATTGCCGCCATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGGCCGTTTTCAGCACTACGCCGCTTGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAatat                                                                                                 <  1:729712/147‑1 (MQ=255)                                                 tggtggCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGATGGTTGCTGCGAGTGAAGAAGATGGCGTGAata                                                                                                  >  2:815561/1‑144 (MQ=255)                                                      gCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACCCGACGCCGCGGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGCTGGCGTGATTATCTGGGGTgg                                                                                        >  1:830391/1‑148 (MQ=255)                                                      gCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACGGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTgg                                                                                             <  2:833802/144‑1 (MQ=255)                                                        cGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGGGAATATCTGGGGTGGCg                                                                                      >  1:333788/1‑149 (MQ=255)                                                         gAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACgg                                                                                     <  1:651544/149‑1 (MQ=255)                                                         gAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCGGACCTATTTCAACACGAAGCCGATGGGCCGCGCCGGGACTGGTCCCATGCTGGTCGCTGCGATGAAAGAAGATGGCGTCAATAACTgggga                                                                                          >  2:324659/1‑143 (MQ=255)                                                         gAAGGTATTGCCGCTATTCAGTGTGGAGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCGGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGt                                                                                          >  2:291451/1‑144 (MQ=255)                                                               agtGCCGCTTTTCCGTGTGGCGCATTTGCTAACTCCTCCGGCGGCCTGACGTATTTCGCCACGACGCCGCTGGGTCGTGCCGTGTCTGGTTACATGCTGGTTGCTGCGATGGAAGAAGATGGCGTGAATATCTGGGGTGACGGt                                                                                    <  2:446861/142‑1 (MQ=255)                                                               aTTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCAc                                                                               <  1:698394/149‑1 (MQ=255)                                                                        atccAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGATGGTTGTTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTAc                                                                           <  2:547971/141‑1 (MQ=255)                                                                           cagcttgGCGCATTGCATACCACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACaaa                                                                        <  2:137523/139‑1 (MQ=255)                                                                           cAGTGTGGCGCCTTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACaaa                                                                        <  2:117022/144‑1 (MQ=255)                                                                           cAGTGTGGCGCATTTCATACCACCACCGGCGGCCTGACCTATTTCAACCCGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACaaa                                                                        <  2:559941/144‑1 (MQ=255)                                                                                 ggCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGTTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGTTGACGGTAGCACCTACAAAGGAAACGatat                                                             >  1:33207/1‑149 (MQ=255)                                                                                  gcgcATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATc                                                            >  1:881566/1‑149 (MQ=255)                                                                                     cATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATTTCTGGGGTGACGGTAGCGCCTGCAAAGGAAACGATATCGag                                                         >  1:2558/1‑148 (MQ=255)                                                                                     cATTTCATAACACCACCGGCGGCCTGACCCAATTCAACACGGCGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGaa                                                         <  1:863192/149‑1 (MQ=255)                                                                                     cATTGCACAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTCCCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGata                                                              <  2:350727/144‑1 (MQ=255)                                                                                       tttCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATc                                                            >  2:847795/1‑144 (MQ=255)                                                                                          cATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGttt                                                    >  1:894690/1‑149 (MQ=255)                                                                                          cATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCGGCAAAGGAAACGATATCGGACgcta                                                    >  1:25664/1‑146 (MQ=255)                                                                                            tAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAGAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACg                                                       >  2:630916/1‑144 (MQ=255)                                                                                             aaCACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTa                                                 <  1:234835/149‑1 (MQ=255)                                                                                              acacCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTGCAAAGGAAACGATATCGAACCTTGCTAt                                                >  1:334599/1‑149 (MQ=255)                                                                                                  caccGGCGGTCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGtt                                            >  1:878972/1‑149 (MQ=255)                                                                                                  caccGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGtt                                            <  1:498159/149‑1 (MQ=255)                                                                                                     cggcggCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATg                                         <  1:437606/149‑1 (MQ=255)                                                                                                     cggcggCATGAACTATTTCGACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAACCGATATCGAACGTTTGTAtag                                              >  2:308248/1‑142 (MQ=255)                                                                                                            cTGACCTTCTTCAAACGGACGCGTCTGGGCCGCGCCGGTACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATACCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTagcaaaacgtt                                       <  2:8343/144‑11 (MQ=255)                                                                                                             tGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGGTGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTGTGGTctgctg                                 >  1:460632/1‑149 (MQ=255)                                                                                                                 cTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGAGATCGAACGTTTCTATCGTTATGGTctgct                                  >  2:62329/1‑144 (MQ=255)                                                                                                                 cTATTACAACACGACGCCGCTGGGCCGCGCCGTGACTGGTCCCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGGGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTctgct                                  >  2:152065/1‑144 (MQ=255)                                                                                                                    tttCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCGATg                          >  1:114142/1‑149 (MQ=255)                                                                                                                    tttCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGAGAGGGACCGGTTCTATCGTTAGGGGCTGCAGAc                               >  2:704771/1‑144 (MQ=255)                                                                                                                     ttCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTCTCGTTATGGTCTGCTGAcc                              >  2:55964/1‑144 (MQ=255)                                                                                                                     ttCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCAGGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGAcc                              <  2:494274/144‑1 (MQ=255)                                                                                                                        aaCACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGACCGTTTCTATCGTTATGGTCTGCTGACCAATGCTGa                      >  1:504845/1‑149 (MQ=255)                                                                                                                          atcgacgCGGCTGGGCCGCGCCGTGACTAGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCAATGCTGAAc                    <  1:248147/147‑1 (MQ=255)                                                                                                                                  cgcTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAGGCAGATGGCGTGAATATCTTGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCAATGCTGAACTGCAGAtt            <  1:304156/149‑1 (MQ=255)                                                                                                                                   gcTGGGCCGCGCCGTGACTGGGAACATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCAATGCTGAACTGCAGAttt           <  1:847052/149‑1 (MQ=255)                                                                                                                                    cTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCAATGCTGAACTGCAg               >  2:1832/1‑144 (MQ=255)                                                                                                                                            cgcCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCAATGCTGAACTGCAGATTTACAAACCGt  <  1:346844/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                              TGGAATACGGCGCGGAGAACGCACGTCTGATCGACTGCCGCAAACAACTGGTGGCCGAAGGTATTGCCGCTATTCAGTGTGGCGCATTTCATAACACCACCGGCGGCCTGACCTATTTCAACACGACGCCGCTGGGCCGCGCCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCAATGCTGAACTGCAGATTTACAAACCGT  >  CP009273/3312177‑3312464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.