| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3312298 = | 61 (1.110) | 5 (0.090) | 5/284 | 6.4 | 8.0% | coding (303/1344 nt) | argG | argininosuccinate synthetase |
| ? | CP009273 | 3312323 = | 56 (1.050) | coding (328/1344 nt) | argG | argininosuccinate synthetase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTCAGCATTGGTCAGCAGACCATAACGATAGAAACGTTCGATATCGTTTCCTTTGTAGGTGCTACCGTCACCCCAGATATTCACGCCATCTTCTTTCATCGCAGCAACCAGCATGGTACCAGTCACGGCGCGGCCCAGCGGCGTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3312446‑3312298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCAATGCTGAACTGCA > CP009273/3312323‑3312450 GTTCAGCATTGGTCAGCAGACCATAACGATAGAAACGTTCGATATCGTTTCCTTTGTAGGTGCTACCGTCACCCCAGATATTCACGCCATCTTCTTTCATCGCAGCAACCAGCATGGTACTAGTCACGGCGCGGCCCAGCCGCGTCGat > 1:248147/1‑147 CGCCATCTTCTTTCATCGCAGCAACCAGCATGGTACCAGTCACGGCGCGGCCCAGCGGCGTCGGGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCGACAAAGGAAACG > 2:747493/1‑144 ATCGCAGCAACCAGCATGGTACCAGTCACGGCGCGGCCCAGCGGCGTCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCG > 1:32952/1‑149 AGCATGGTACCAGTCACGGCGCGGCCCAGCGGCGTCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAGGGAAACGATATCGAACGGTTCTATCGTTATGGa > 2:120322/1‑143 ACCAGTCACGGCGCGGCCCAGCGGCGTCGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGAC < 2:29412/144‑1 ACGGCGCGGCCCAGCGG‑‑‑CGTGACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCAATGCTGAACTGCA > 1:151640/1‑149 GTTCAGCATTGGTCAGCAGACCATAACGATAGAAACGTTCGATATCGTTTCCTTTGTAGGTGCTACCGTCACCCCAGATATTCACGCCATCTTCTTTCATCGCAGCAACCAGCATGGTACCAGTCACGGCGCGGCCCAGCGGCGTCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3312446‑3312298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgACTGGTACCATGCTGGTTGCTGCGATGAAAGAAGATGGCGTGAATATCTGGGGTGACGGTAGCACCTACAAAGGAAACGATATCGAACGTTTCTATCGTTATGGTCTGCTGACCAATGCTGAACTGCA > CP009273/3312323‑3312450 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |