Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC	CP009273	3,676,833	Δ3 bp	intergenic (‑26/+155)	dctA ← / ← yhjK	C4‑dicarboxylic acid, orotate and citrate transporter/cyclic‑di‑GMP phosphodiesterase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3676832	3 (0.040)	70 (0.930)	62/296	0.1	95.9%	intergenic (‑25/+158)	dctA/yhjK	C4‑dicarboxylic acid, orotate and citrate transporter/cyclic‑di‑GMP phosphodiesterase
	?	CP009273	3676836 =	3 (0.040)					intergenic (‑29/+154)	dctA/yhjK	C4‑dicarboxylic acid, orotate and citrate transporter/cyclic‑di‑GMP phosphodiesterase

CCGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3676689‑3676832 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATCAGTT  >  CP009273/3676836‑3676981                                                                                                                                                                                                                                                                                                    CCGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTA                                                                                                                                               >  2:1107116/1‑149  CGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGGCCTTTAGTAAAACCACAGTTGTAA                                                                                                                                              >  1:934059/1‑149   GTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACCGAGAGGTTTTCATAGGGTGTACTTTAGTAAAACCACAGTTGTAAa                                                                                                                                             >  1:241609/1‑148   GTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAG                                                                                                                                             <  2:1155155/149‑1   GTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTATTCATAAGGTGTCCTTTAGTAAAACCACAGTTGTAAG                                                                                                                                             >  1:972607/1‑149        CAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTAT                                                                                                                                        >  1:486617/1‑149         AAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCCTGGAGGTTCCTTTAGTAAAACCACAGTTGTAAGGTTATG                                                                                                                                       >  2:941601/1‑149         AAGCAGTTTCATTTGCTCGCCTATTTCAGGATGGAAATGGCCAAGGTGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTACAGGCTTTTAAACAGAGAGGTTTTTATAAGGGGTCCTTTAGTAAAACCACAGTTGTAAGGTTATG                                                                                                                                       <  1:243873/149‑1               TTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTAC                                                                                                                                 >  1:1199746/1‑149                         TCGCCTATTTCAGGATAGAAATGGCCAAGGCGATCAACAAAGTCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTT                                                                                                                       >  2:597317/1‑149                         TCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTGAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTT                                                                                                                       >  1:296469/1‑149                           GCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAA                                                                                                                     <  2:1069530/149‑1                            CCTATTTCATGAGAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAA                                                                                                                    <  1:1064028/149‑1                            CCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAA                                                                                                                    <  1:1018681/149‑1                              TATTCCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAAT                                                                                                                  <  2:412514/149‑1                                TTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAA                                                                                                                >  2:1050335/1‑149                                  TCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACA                                                                                                              >  1:784025/1‑149                                    AGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACC                                                                                                            <  1:927344/149‑1                                    AGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGGCAGGACCTGAAAGGAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACC                                                                                                            <  1:649009/149‑1                                      GATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCA                                                                                                          <  2:836781/149‑1                                        TAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGA                                                                                                        >  2:1156014/1‑149                                           AAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAA                                                                                                     >  1:640698/1‑149                                           AAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAA                                                                                                     >  1:716209/1‑149                                             ATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAATGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACA                                                                                                   <  1:809401/149‑1                                              TGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGGTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACAT                                                                                                  >  2:275947/1‑149                                                GCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCA                                                                                                >  1:773462/1‑149                                                 CCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCAC                                                                                               >  1:391069/1‑149                                                  CAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACA                                                                                              >  2:970743/1‑149                                                     GGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAA                                                                                           >  1:758360/1‑149                                                       AGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAAT                                                                                         <  2:1116960/149‑1                                                        GAATACCAATGGCTATCGCTGGCGGGACCTTAAAGTAAAGGCTTTTAAACAGAGAGGGTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCGGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATG                                                                                        >  1:596987/1‑149                                                            ACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAAAAACAAGACAACATCACAGGAATGTACC                                                                                    >  1:1146632/1‑149                                                             CCAATGGTTATCGCTGGCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCT                                                                                   <  1:639280/149‑1                                                              CAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTG                                                                                  >  2:985815/1‑149                                                                 TGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGAT                                                                               <  1:131707/149‑1                                                                     TATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATA                                                                           >  2:98926/1‑149                                                                        CGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATT                                                                        >  2:1022377/1‑149                                                                        CGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATT                                                                        <  1:407699/149‑1                                                                        CGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATT                                                                        <  1:66751/149‑1                                                                               AGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAA                                                                 >  2:707368/1‑149                                                                                GGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAA                                                                >  2:1043806/1‑149                                                                                 GACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTGCCTGGATCATAATTGAAACAAAA                                                               >  1:930179/1‑149                                                                                  ACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAA                                                              <  2:251029/149‑1                                                                                   CCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCACAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAG                                                             <  2:16360/149‑1                                                                                           TAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAA                                                     <  1:325875/149‑1                                                                                             AAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGACCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTAACTGTGGCCGTAAAATAACCCCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGT                                                   >  1:353656/1‑149                                                                                                GCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTG                                                >  2:1219595/1‑149                                                                                                  TTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACATCCTCACGGAACGGTCCCTGTATCATAATTGAACCAAAAAGGTTAAAAAGTTTAAG                                              >  1:859272/1‑149                                                                                                         CAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTC                                       >  2:544734/1‑149                                                                                                          AGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAAACAAAAGAGTAAAGAGTTTGACCTGGCGCG                                      >  1:307769/1‑149                                                                                                            AGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCA                                    <  1:1189376/149‑1                                                                                                                GTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACATAAAGGTTAAAAAGTTTGAGCTGGCCCGCACAAA                                <  2:893310/149‑1                                                                                                                GTTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCAAAAA                                >  1:604903/1‑149                                                                                                                 TTTTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCGAGCCCAAAC                               >  2:1103245/1‑149                                                                                                                   TTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAATAGGTTCAAAACTTTGAGCTGGCTCGCACAAACCA                             <  2:676057/149‑1                                                                                                                   TTCATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCA                             <  1:54397/149‑1                                                                                                                    ttATAGGGTCTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTTGATCATAATTGAAACAAAAAGGTTAAAACGTTTGAGCTGGCTCGCACAAACCAG                            <  1:864341/147‑1                                                                                                                      ATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTAGATGCGTCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTAAGCTGACTCGCACAAACCACCA                          >  1:1112307/1‑149                                                                                                                      ATAGGGTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCA                          <  2:1199746/149‑1                                                                                                                           GTGTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTAAAACAAAAAGGTTAAAAAGATTGAGCTGGCTCGCACAAACAAGCACTTTT                     >  1:999935/1‑149                                                                                                                             GTCCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTA                   <  2:486617/149‑1                                                                                                                             GTCCTTCAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTA                   <  1:93634/149‑1                                                                                                                               CCTTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACCAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAA                 <  2:292941/149‑1                                                                                                                                 TTTAGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTGAAAAGTTTGAGCTGGCTCGCGCAAACCAGCACTTTTTAAAGT               >  2:246324/1‑149                                                                                                                                    AGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTT            >  2:17606/1‑149                                                                                                                                    AGTAAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTAAAAAAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTT            <  1:916724/149‑1                                                                                                                                       AAAACCACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTA         >  2:422949/1‑149                                                                                                                                            CACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATCAG    >  2:832754/1‑149                                                                                                                                             ACAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAAAATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATCAGT   <  1:942753/149‑1                                                                                                                                              CAGTTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATCAGTT  <  1:1107116/149‑1                                                                                                                                                                                                                                                                                                    CCGTCGCCAAGCGGTTTCATTTGCTCGCCTATTTCAGGATAGAAATGGCCAAGGAGAATACCAATGGCTATCGCTGTCAGGACCTGAAAGTAAAGGCTTTTAAACAGAGAGGTTTTCATAGGGTGTCCTTTAGTAAAACCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3676689‑3676832 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTAAGGTTATGGGGTACCTGCGGCCTTAAAATAACACCCAGACAACATCACAGAAATGTACCTGGATCATAATTGAAACAAAAAGGTTAAAAAGTTTGAGCTGGCTCGCACAAACCAGCACTTTTTAAAGTTTTGTAATCAGTT  >  CP009273/3676836‑3676981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.