New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 786311	16 (0.810)	3 (0.160)	3/258	NT	14.2%	coding (175/1047 nt)	galT	galactose‑1‑phosphate uridylyltransferase
	?	CP009273	= 786404	21 (1.110)					coding (82/1047 nt)	galT	galactose‑1‑phosphate uridylyltransferase

GTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCTGTGGATGGCGTGACTGCCAGTGCCAGGTGTCCTGCGCCAT  >  CP009273/786259‑786551                                                                                                                                                  |                                                                                                                                                    gTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGgtg                                                                                                                                                  <  1:134726‑M2/149‑4 (MQ=255)  tGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGgtgc                                                                                                                                                 >  1:60831‑M2/1‑145 (MQ=255)  tGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGGAACAGCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGgtgc                                                                                                                                                 <  1:213321‑M2/149‑5 (MQ=255)       aCGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCATGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCCGGCGCGCTTAGCGCGgtg                                                                                                                                                  <  2:52857‑M2/143‑4 (MQ=255)             gTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGa                                                                                                                                            >  2:173544/1‑143 (MQ=255)                          cGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCCGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCACCCTGCCACGGGCGCTTAGCGCGGTGCGGGGCAACCAGAAACCAGTGgccc                                                                                                                         >  1:118272/1‑148 (MQ=255)                           ggggTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCAtt                                                                                                                              <  2:54504/143‑1 (MQ=255)                           ggggTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCgg                                                                                                                        >  1:191658/1‑149 (MQ=255)                               tttttATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAg                                                                                                                    >  1:12157/1‑149 (MQ=255)                                        ccTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGgtgcgggtgacaggcgataaaaaccccgattacacc                                                                                                                 <  2:280416‑M2/143‑37 (MQ=255)                                            tCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAgcgg                                                                                                       <  1:307234/149‑1 (MQ=255)                                             aagacgcacgtgcccTGCGCAGAGGAAGCAATCTCGTCCGTGCCGAGGGACCACCTAGTTTGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTGGCGCGGTGCGGTGAATCCATAAACCATTTCCCGGTGAGCGGGTTGt                                                                                                            <  2:226325/130‑1 (MQ=255)                                                  gCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGAtgt                                                                                                 <  1:210065/149‑1 (MQ=255)                                                     caTTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTTAGCGGGTTGTAGCGGCGATGTGga                                                                                              <  1:274446/149‑1 (MQ=255)                                                          ccTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGgtgcgggtgacaggcgataaaaaccccgattacaccgggacttacgttttcactaatgac                                                                                         <  1:61997‑M2/149‑61 (MQ=255)                                                           cTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGga                                                                                              <  2:156386/143‑1 (MQ=255)                                                                 agagGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGCATCCATTGCCCGGTGAGCGGGTTGTAGCGGGGAGGGGGATGACCa                                                                                        >  2:130916/1‑143 (MQ=255)                                                                 agagGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCCACgggg                                                                                  >  1:21642/1‑148 (MQ=255)                                                                                  tCGTGCGCAGGTAACACATGTTTGGCTGGCGTTTCCTGCGCACCCTGCCAGGGGCGCGTAGCGCGGTGCGGTGAAACCGGAATCCACTGCCCGGTGAGCCGGTTGTAGCGGCGATGTGGCTGATCCACGGGAGTAAGTTgggg                                                                       >  2:164686/1‑140 (MQ=255)                                                                                        gcAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGTGATTAAATTGCGTCATGGTCGTTcc                                                           <  1:190757/149‑1 (MQ=255)                                                                                            gTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCttca                                                       >  1:23360/1‑147 (MQ=255)                                                                                             tAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCGTGCCAGGGGCGCTTAGCGCGGTGCGGTGATACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAAt                                                      >  1:269859/1‑149 (MQ=255)                                                                                             tAACACCTGTTTGGCTGGCGGTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTc                                                            <  2:113640/143‑1 (MQ=255)                                                                                                             ggcGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAGTTGCGTCATGGTCGTTCCTTAATCGGGATATcc                                            >  2:167155/1‑143 (MQ=255)                                                                                                             ggcGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCTGAgg                                      >  1:195398/1‑149 (MQ=255)                                                                                                              gcttttCCTGGGCCCTCTGCCAGGGGCGCTTAGCGCGGTCCGGTGAAACCCGAATCCATTGCCCGGTGAGCGGGTTGCAGCGGTGATGTGGATGAGCAACGGTAGTAAATTTCGTCATGGTCGTTCCTTAATCGGGATATCCCTGTGGa                                     <  1:352740/146‑1 (MQ=255)                                                                                                                      tGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGGTATCCCTGTGGATg                                   >  2:248839/1‑143 (MQ=255)                                                                                                                                           ttAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCTGTGGATGGCGTTACTGCCAGTGCCAGGTGTCCTg        <  1:367348/149‑1 (MQ=255)                                                                                                                                             aGCGCGgtgcgggtgacaggcgataaaaaccccgattacaccgggacttacgttttcactaatgactttgcggctttgatgtctgacacgccagatgcgccagaaagtcacgatccgctgatgcgttgccagagcgcgcgcgg            >  2:55574‑M2/1‑6 (MQ=255)                                                                                                                                               cgcgGGGCGGTGCAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCTGTGGATGGCGTGACTGCCAGTGCCAGGTGTCCTGCGcc    <  1:223680/149‑1 (MQ=255)                                                                                                                                                 cggtgcggtgAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCTGTGGATGGCGTGACTGCCAGTGCCAGGTGTCCTGCGCCAt  <  1:196718/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GTGAAAACGTAAGTCCCGGTGTAATCGGGGTTTTTATCGCCTGTCACCCGCACATTACCTGCGCAGAGGAAGCAATCTGGATCGTGCGCAGGTAACACCTGTTTGGCTGGCGTTTCCTGCGCCCCCTGCCAGGGGCGCTTAGCGCGGTGCGGTGAAACCAGAATCCATTGCCCGGTGAGCGGGTTGTAGCGGCGATGTGGATGATCAACGGGATTAAATTGCGTCATGGTCGTTCCTTAATCGGGATATCCCTGTGGATGGCGTGACTGCCAGTGCCAGGTGTCCTGCGCCAT  >  CP009273/786259‑786551

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.